| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 6,995,809 – 6,995,913 |
| Length | 104 |
| Max. P | 0.697307 |
| Location | 6,995,809 – 6,995,913 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 76.57 |
| Mean single sequence MFE | -28.20 |
| Consensus MFE | -15.91 |
| Energy contribution | -17.25 |
| Covariance contribution | 1.34 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.56 |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.697307 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6995809 104 + 27905053 UAAAUAAGGUACCACAUUAAUAUACUGUGAUGGCCCCGGAAACGGAAAUAUAGCCAAUAUCCUGGCAGCUUGCAUAGAAGCUGGCAGA------GUUAGUAACAAA---AAAC .......(((.((((((.........))).)))..(((....))).......)))......(((.((((((......)))))).))).------............---.... ( -26.70) >DroGri_CAF1 63096 113 + 1 CAAAUACGGCAGCACAUUAAUGUACUGCGAGGGACCCGCGAAGGGAAAUAUGGCCAGUAUGCGUGCGCCUUCCAGCAAAUGUGGCAGCAUAAAAAUUAGCACUAAAGCACUGC ...((((.((((.(((....))).))))......(((.....)))...........))))(((((((((...((.....)).))).((..........))......)))).)) ( -26.00) >DroSec_CAF1 24387 104 + 1 UAGAUAAGGUAACACAUUAAUAUACUGUGAUGGCCCCGGAAACGGAAAUAUAGCCAGUAUCCUGGCAGCCUGCAGAUAAGCUGGCAGA------GUUAGUAACAGA---AAAC ........................((((..((((.(((....))).......(((((....))))).(((.((......)).)))...------))))...)))).---.... ( -29.30) >DroEre_CAF1 5002 104 + 1 UAGAUAGGGUACCACAUUAAUAUACUGCGAUGGCCCCGGAAACGGAAAUAUGGCCAGUAUCCUGGCAGCCUGCAGAUAGGCUGGCAGA------GUUAGUAACAGA---AAAC ...............(((((((((((((.(((...(((....)))...))).).)))))).(((.(((((((....))))))).))).------))))))......---.... ( -33.40) >DroYak_CAF1 9096 104 + 1 UAGAUAGGGUACCACAUUUAUAUACUGCGAUGGCCCCGGAAACGGAAAUAUGGCCAGUAUCCUGGCAGCCUGCAGAUAGGCUGGCAGA------GUUAGUAACAGA---AAAC (((((..(....)..)))))..((((((..((((((((....)))......))))).....(((.(((((((....))))))).))).------).))))).....---.... ( -33.90) >DroAna_CAF1 7315 101 + 1 UAGAUAUGGCAACGCAUUUAUGUACUGCGACGGUCCGGGAAAUGGAAAUACAGCCAGUAUUCUUGCCGCCUCCAAGCACACAGGCAUA---------AGUAAAGUA---AAAA (((((.((....)).)))))..((((...(((((..(((((.(((........)))...))))))))((((..........))))...---------.))..))))---.... ( -19.90) >consensus UAGAUAAGGUACCACAUUAAUAUACUGCGAUGGCCCCGGAAACGGAAAUAUAGCCAGUAUCCUGGCAGCCUGCAGAUAAGCUGGCAGA______GUUAGUAACAGA___AAAC .....................(((((((.(((...(((....)))...))).).)))))).(((.((((((......)))))).))).......................... (-15.91 = -17.25 + 1.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:57 2006