Locus 2587

Sequence ID 3R_DroMel_CAF1
Location 6,986,773 – 6,986,887
Length 114
Max. P 0.961582
window4217

overview

Window 7

Location 6,986,773 – 6,986,887
Length 114
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 88.42
Mean single sequence MFE -39.10
Consensus MFE -34.80
Energy contribution -35.48
Covariance contribution 0.67
Combinations/Pair 1.09
Mean z-score -2.69
Structure conservation index 0.89
SVM decision value 1.53
SVM RNA-class probability 0.961582
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6986773 114 - 27905053
UGGCUGAAAUCGCUUUUGGGGCUUUACCCAGAUGCGAUUGCAAACUGAUGUGAUGUGCGUUCAGAUUCAUACCU------AUACGAGACUAUGGUGUGCAGCUGAAUAGUCGCUUCAGAU
..((...((((((.((((((......)))))).))))))))...((((.(((((....((((((...((((((.------(((......)))))))))...)))))).))))).)))).. ( -42.80)
>DroSim_CAF1 21946 114 - 1
UGGCUGAAAUCGCUUUUGGGGCUUUACCCAGAUGCGAUUUGCAACUGAUGUGAUGUGCGUUCAGAUUCAUACCU------AUACGACACUAUGGUGUGCAGCUGAAUAGUCGCUUCAGAU
..((..(((((((.((((((......)))))).)))))))))..((((.(((((....((((((...((((((.------(((......)))))))))...)))))).))))).)))).. ( -44.10)
>DroEre_CAF1 27372 120 - 1
UGGCUGAAAUUGUUAUUGGGGCUUUACCCAAAUGUUAUUGUAAGCUGAUGUGAUGUGCGUUCAGAUUCAUACCUACGAGUAUACGAGACGAUGGUGUGCAGCUGAAUAGGGGCUUCAGAU
.((((..(((.....(((((......))))).....)))...)))).((.(((.((.(((((((...((((((..((...........))..))))))...))))))..).)).))).)) ( -30.40)
>consensus
UGGCUGAAAUCGCUUUUGGGGCUUUACCCAGAUGCGAUUGCAAACUGAUGUGAUGUGCGUUCAGAUUCAUACCU______AUACGAGACUAUGGUGUGCAGCUGAAUAGUCGCUUCAGAU
.......((((((.((((((......)))))).)))))).....((((.(((((....((((((...((((((...................))))))...)))))).))))).)))).. (-34.80 = -35.48 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:56 2006