Locus 2586

Sequence ID 3R_DroMel_CAF1
Location 6,986,393 – 6,986,499
Length 106
Max. P 0.976375
window4216

overview

Window 6

Location 6,986,393 – 6,986,499
Length 106
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 79.48
Mean single sequence MFE -19.47
Consensus MFE -11.51
Energy contribution -11.40
Covariance contribution -0.11
Combinations/Pair 1.13
Mean z-score -2.90
Structure conservation index 0.59
SVM decision value 1.77
SVM RNA-class probability 0.976375
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6986393 106 - 27905053
AAGCUCAGAAAAAUUCCCCGAUAUG-UAAUAAAACAAUAUAUAUCAGUC----------UACCAGCCUACUUUGCUACAUGACAAGCCAAUUCAAG---UGCAUUCUGAGCGAAAUAAAU
..((((((((.........((((((-((.........)))))))).(((----------....(((.......)))....))).............---....))))))))......... ( -23.40)
>DroSim_CAF1 21593 106 - 1
AAGCUCAGAAAAAUUCCCCGAUAAG-UAAUAAAACAAUAUAUAUCAGUC----------UACCAGCCUACUUUGCUAUAUGACAAACCAAUUCAAA---UGCAUUCUGAGCGAAAUACUU
..((((((((.........((((.(-((.........))).)))).(((----------....(((.......)))....))).............---....))))))))......... ( -19.60)
>DroEre_CAF1 26973 120 - 1
AAUCUCAGAAAAAUUCCCCGAUGAUUCUAUAAAACCAUAUAUAUCAGUGUAUAAUAUAUUACCAGUCUACUUUGCUACAUAGCAAAAUUAUUUAAAUUAUUCAUUCUGAGCGAAAUACCU
...(((((((.........((((((..((((......)))).))).(.(((........)))).)))...((((((....)))))).................))))))).......... ( -15.40)
>consensus
AAGCUCAGAAAAAUUCCCCGAUAAG_UAAUAAAACAAUAUAUAUCAGUC__________UACCAGCCUACUUUGCUACAUGACAAACCAAUUCAAA___UGCAUUCUGAGCGAAAUACAU
..((((((((.........((((..................))))..................(((.......)))...........................))))))))......... (-11.51 = -11.40 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:55 2006