| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 6,986,083 – 6,986,188 |
| Length | 105 |
| Max. P | 0.768820 |
| Location | 6,986,083 – 6,986,188 |
|---|---|
| Length | 105 |
| Sequences | 3 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 93.53 |
| Mean single sequence MFE | -26.47 |
| Consensus MFE | -20.67 |
| Energy contribution | -21.00 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.97 |
| Structure conservation index | 0.78 |
| SVM decision value | 0.52 |
| SVM RNA-class probability | 0.768820 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6986083 105 + 27905053 CCCACAACGCCCACGGGCUAAAUGCUUUUAUUUUCUUUGCCGUGCAUCUUCCUCUUCUCAUCCUUUUGCCAAGCAAAAGGCGUGGUAAAAGUUGUGUAGCCCCAA ..............((((((...((((((((......(((...)))............(((((((((((...)))))))).)))))))))))....))))))... ( -28.20) >DroSim_CAF1 21299 99 + 1 CCC--AACGCCCACGGGCUAAAUGCUUUUAUUUUCUUUGCCGUGCAUCUUCCUCUUCUCAUCCUUUUGCCAAGCAAAAGGCGUG-UAAAAGUUG--UAGC-CCAA ...--.........((((((...(((((((.......(((...)))............(((((((((((...)))))))).)))-)))))))..--))))-)).. ( -27.70) >DroEre_CAF1 26641 98 + 1 CCC--AACGCCUCC-GGCUAAAUGCUUUUAUUUUCCUUGCCGUGCAUCUUCCUCUUCUCAUCCUUUUGCCAAGCAAAAGGCGUG-UAAAAGUUG--UAGC-CCAA ...--.........-(((((...(((((((.......(((...)))............(((((((((((...)))))))).)))-)))))))..--))))-)... ( -23.50) >consensus CCC__AACGCCCACGGGCUAAAUGCUUUUAUUUUCUUUGCCGUGCAUCUUCCUCUUCUCAUCCUUUUGCCAAGCAAAAGGCGUG_UAAAAGUUG__UAGC_CCAA ..............((((((...(((((((.......(((...)))............(((((((((((...)))))))).))).)))))))....)))).)).. (-20.67 = -21.00 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:54 2006