Locus 2584

Sequence ID 3R_DroMel_CAF1
Location 6,979,100 – 6,979,219
Length 119
Max. P 0.627615
window4214

overview

Window 4

Location 6,979,100 – 6,979,219
Length 119
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 77.30
Mean single sequence MFE -32.78
Consensus MFE -12.70
Energy contribution -12.70
Covariance contribution 0.00
Combinations/Pair 1.38
Mean z-score -1.91
Structure conservation index 0.39
SVM decision value 0.19
SVM RNA-class probability 0.627615
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6979100 119 - 27905053
UUAGGAGACAUUGGAGCCUUGUGGGCAUC-UAUCCAAAAGACAUAUACUCAGAAUCUCAUCGAUCAUUAUCAAAUGGGAUUUCGCAUCACCAGAGGCCUUUUCGAGGACUCCAAUUUCCA
...(((((..(((((((((((.((((.((-(........((.......)).(((((((((.(((....)))..))))))))).........))).))))...))))).))))))))))). ( -36.10)
>DroPse_CAF1 49077 119 - 1
CUAGGAGACCUGGCCGCCCUGUGGCAGUC-CAUACAGAAACCUCUCACCCAAAAGCUAAUAGAUCAUUAUCAUAUGGGUUUUCGCCUCACACGAGCGCUCUUUGUGGACCCCAAUUUUCA
....((((..(((((((...))))).(((-((((.(((........(((((...(.((((.....)))).)...)))))....(((((....))).))))).)))))))..))..)))). ( -31.20)
>DroEre_CAF1 18337 119 - 1
UUAGGAGACAUUGCGGCCUUGUGGGCAUC-GAUCCAAAAGCCAGUGACUCAGAAACUUAUUGAUCACUAUCAGAUGGGUUUCCGCAUCACAAGAGGACUCUUCGAGGACUCCAAUUUCCA
...(((((......(((....((((....-..))))...))).((((..(.(((((((((((((....)))).))))))))).)..))))..(((..(((...)))..)))...))))). ( -34.40)
>DroAna_CAF1 14916 119 - 1
ACAGGCGACAUUGCUGCCUUGUGGGAUUC-GAUCAAUAAGCCUUUGACGCAGAAGCUUAUUGAUCACUAUCAAAUGGGUUUCCGACUCACAAGAGGUCUUUUUGUGGAUCCUAACUUUCA
..(((((.......)))))..((((((((-(((((((((((.((((...)))).))))))))))).....((((.((..(((..........)))..)).)))).))))))))....... ( -36.50)
>DroPer_CAF1 49865 120 - 1
CUAGGAGACCUGGCCGCCCUGUGGCAGUCCCAUACAGAAACCUCUCACCCAAAAGCUAAUAGAUCAUUAUCAUAUGGGUUUUCGCCUCACACGAGCACUCUUUGUGGACCCCAAUUUUCA
...((.(((...(((((...))))).)))(((((.(((........(((((...(.((((.....)))).)...)))))....((.((....))))..))).)))))...))........ ( -25.70)
>consensus
CUAGGAGACAUUGCCGCCUUGUGGGAAUC_CAUCCAAAAGCCUCUCACCCAGAAGCUAAUAGAUCAUUAUCAAAUGGGUUUUCGCCUCACAAGAGGACUCUUUGUGGACCCCAAUUUUCA
...(((((.........(((((((............((......)).....(((((((((((((....))).))))))))))....))))))).((..(((....)))..))..))))). (-12.70 = -12.70 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:53 2006