| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 6,971,225 – 6,971,324 |
| Length | 99 |
| Max. P | 0.647038 |
| Location | 6,971,225 – 6,971,324 |
|---|---|
| Length | 99 |
| Sequences | 3 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 86.96 |
| Mean single sequence MFE | -20.99 |
| Consensus MFE | -15.47 |
| Energy contribution | -15.26 |
| Covariance contribution | -0.21 |
| Combinations/Pair | 1.21 |
| Mean z-score | -2.18 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.647038 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6971225 99 - 27905053 GGCCAGAUAAAAAAGCACCCGAACGGGGUAAAACGAAUUGAAAAUAGCCAAAUGGCUAAAAAGAUUAGAAGCUGCAUGGGGUGA-AUGAGUUGGGGAAAU ..((((.........(((((.(..(.(((......((((.....(((((....)))))....))))....))).).).))))).-.....))))...... ( -21.66) >DroEre_CAF1 10769 99 - 1 GGCCAGAUAAAACAGCACCCGAACGGGGUAAAACGAAUUGAAAAUAGCCAAAUGGCUAAAAAGAUUAGAAGCUGCAAGGGGCGA-AUGAGUUUGGAAAAU ..((((((......((.(((....(.(((......((((.....(((((....)))))....))))....))).)..)))))..-....))))))..... ( -23.50) >DroAna_CAF1 8139 99 - 1 GGCCAGAUAAAA-AGCGAGCGAACGGAGUAAAACGAAUUGAAAAUGGCCAAAUGGUUAGAAAGAUUAGACGCUGCGAGGGGUAAAAUGGGUGGGGGAACU ..(((.((....-.((.((((..((........))((((.....(((((....)))))....))))...)))))).....))....)))...((....)) ( -17.80) >consensus GGCCAGAUAAAA_AGCACCCGAACGGGGUAAAACGAAUUGAAAAUAGCCAAAUGGCUAAAAAGAUUAGAAGCUGCAAGGGGUGA_AUGAGUUGGGGAAAU .(((.........(((((((.....))))......((((.....(((((....)))))....))))....)))......))).................. (-15.47 = -15.26 + -0.21)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:46 2006