Locus 2577

Sequence ID 3R_DroMel_CAF1
Location 6,967,045 – 6,967,154
Length 109
Max. P 0.500000
window4203

overview

Window 3

Location 6,967,045 – 6,967,154
Length 109
Sequences 4
Columns 109
Reading direction forward
Mean pairwise identity 93.09
Mean single sequence MFE -21.33
Consensus MFE -18.66
Energy contribution -18.97
Covariance contribution 0.31
Combinations/Pair 1.05
Mean z-score -1.37
Structure conservation index 0.88
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6967045 109 + 27905053
AUCGGCUGGAUCUCCCUUCUUCCGCCUCUCACCGCAUCUCUUUCGCUCCAAUCGCUACCCGUCUCUUUCUGUGACCAAGUGCAUGGCAAAUGUCACACAUGCAUUUCAA
...(((.(((..........)))))).......((((.......((.......))..............((((((....(((...)))...)))))).))))....... ( -20.00)
>DroSec_CAF1 4956 108 + 1
AUCGGCUGGAUCUCC-UCCUUCCGCCUCUCUCCGCAUCUCUUUCGCUCCAAUAGCUACCCGUCUCUUUCUGUGGCCAAGUGCAUGGCAAAUGUCACACAUGCAUUUCAA
...(((.(((.....-....)))))).......((((.......(((.....)))..............((((((....(((...)))...)))))).))))....... ( -20.50)
>DroSim_CAF1 6781 108 + 1
AUCGGCUGGAUCUCC-ACCUUCCGCCUCUCUCCGCAUCUCUUUCGCUCCAGUCGCUACCCGUCUCUUUCUGUGGCCAAGUGCAUGGCAAAUGUCACACAUGCAUUUCAA
...(((((((.....-.......((........))...........)))))))(((((............))))).(((((((((............)))))))))... ( -23.20)
>DroEre_CAF1 6734 101 + 1
AUCGGCUGGAUCUC----CUUCCGCCUCUC----CAUCUCUUUCGCUCCAAUCGCCACCCGUCUCUUUCUGUGGCCAAGUGCAUGGCAAAUGUCACACAUGCAAUUCAA
...(((.(((....----..))))))....----..........((.......(((((............)))))...(((..((((....)))))))..))....... ( -21.60)
>consensus
AUCGGCUGGAUCUCC_UCCUUCCGCCUCUCUCCGCAUCUCUUUCGCUCCAAUCGCUACCCGUCUCUUUCUGUGGCCAAGUGCAUGGCAAAUGUCACACAUGCAUUUCAA
...(((.(((..........))))))...........................(((((............))))).(((((((((............)))))))))... (-18.66 = -18.97 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:43 2006