Locus 2576

Sequence ID 3R_DroMel_CAF1
Location 6,965,232 – 6,965,325
Length 93
Max. P 0.594149
window4202

overview

Window 2

Location 6,965,232 – 6,965,325
Length 93
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 74.97
Mean single sequence MFE -32.82
Consensus MFE -16.84
Energy contribution -17.73
Covariance contribution 0.89
Combinations/Pair 1.21
Mean z-score -1.68
Structure conservation index 0.51
SVM decision value 0.12
SVM RNA-class probability 0.594149
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6965232 93 + 27905053
ACCCUUAAUGAGCUGCAGAUCCAGUGGUUCCAGGCUGGAAGUGCCUUGAAUCUAAUGAAGGAGCUUGCCGCC---------AAGGGUGGCGAUAAGAAAUAG------------------
((((((...((((..(.......)..))))..(((.(.((((.((((.(......).)))).)))).).)))---------))))))...............------------------ ( -29.40)
>DroSec_CAF1 3160 93 + 1
AGCCUUAACGAGCUCCAGAUCCAGUGGUUCCAGGCCGGAAGUGCCUUGAAUCUGAUGAAGGAGCUUGCCGCC---------AAGGGUGGCGAUAAGAAAUAG------------------
...((((.((((((((..(((....(((((.(((((....).)))).))))).)))...)))))))((((((---------...))))))).))))......------------------ ( -37.90)
>DroSim_CAF1 4943 93 + 1
AGCCUUAACGAGCUGCAGAUCCAGUGGUUCCAGGCCGGAAGUGCCUUGAAUCUGAUGAAGGAGCUUGCCGCC---------AAGGGUGGCGAUAAGAAAUAG------------------
...((((.((((((.(..(((....(((((.(((((....).)))).))))).)))...).)))))((((((---------...))))))).))))......------------------ ( -33.20)
>DroEre_CAF1 4958 93 + 1
ACCCUUAACGAGCUGCAAAUUCAAUGGUUCCAGGCCGGAAGUGCCUUGAAUCUCAUGAAGGAGCUGUCCGCC---------AAGGGUGGCGAUAAGAAAUAG------------------
((((((..((..(.((...((((..(((((.(((((....).)))).)))))...))))...)).)..))..---------))))))...............------------------ ( -32.00)
>DroAna_CAF1 3331 114 + 1
ACGCUCAAUGACCUGCAAAUCCAAUGGUUCAAGGCUGGCAGUGCUCUGAAUCUCAUGAAGGAGCUGGCCGGCGGA------AAAGGUGGCGAUGCCAAGAAGGGUGACGAUACUAAGAAG
.(((((....((((.....(((..((...))..((((((...(((((...((....)).)))))..)))))))))------..))))(((...))).....))))).............. ( -34.00)
>DroPer_CAF1 31172 102 + 1
UCGUUUAACGAUCUCCAGAUCAAGUGGUUCCAAGCUGGCAGUGCCUUGAAUCUGAUGAAGGAACUGGCCUCCGGUGGGGGCAAGGGUGACGGCAAGGG------------------CAAG
..((((...((((....))))..((.(((((.......((((.((((.(......).)))).))))((((((...))))))...)).))).))..)))------------------)... ( -30.40)
>consensus
ACCCUUAACGAGCUGCAGAUCCAGUGGUUCCAGGCCGGAAGUGCCUUGAAUCUGAUGAAGGAGCUGGCCGCC_________AAGGGUGGCGAUAAGAAAUAG__________________
...((((.(.((((.(...((....(((((.(((((....).)))).)))))....)).).)))).((((((............))))))).))))........................ (-16.84 = -17.73 +   0.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:42 2006