| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 6,960,711 – 6,960,809 |
| Length | 98 |
| Max. P | 0.789853 |
| Location | 6,960,711 – 6,960,809 |
|---|---|
| Length | 98 |
| Sequences | 3 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 84.39 |
| Mean single sequence MFE | -31.23 |
| Consensus MFE | -22.87 |
| Energy contribution | -23.53 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.20 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.58 |
| SVM RNA-class probability | 0.789853 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6960711 98 - 27905053 GGUGGUCGGAGUGGUGGGCGCGAGGAGCU----GUAGGUGUGGCCGCUGUGGUGUCGGUGGCCAAAGUUGCAACAAAACUGAAACUUUGGACUGGCAAAAAU (.((((((((((..(((..((.....))(----((((.(.(((((((((......))))))))).).)))))......)))..))))).))))).)...... ( -33.70) >DroSec_CAF1 9862 91 - 1 -------GGAAUGGUGGGCGCGAGGAGCU----GUAGGUGUGGCCGCUGUGGUGUCGGUGGCCAAAGUUGCAACAAAACUGAAACUUUGGACUGGCAAAAAU -------...(((((((.((((.......----.....)))).)))))))..(((((((..((((((((.((.......)).)))))))))))))))..... ( -28.90) >DroYak_CAF1 10943 91 - 1 -GUGGGCGGAG----------GAGGACCUGUAUGUAGGUGUGGCCGCUGUGGUGUCGGUGGCCAAAGUUGCAACAAAACUGAAACUUUGGACUGGCAAAAAU -...(((((..----------..(.(((((....))))).)..)))))....(((((((..((((((((.((.......)).)))))))))))))))..... ( -31.10) >consensus _GUGG_CGGAGUGGUGGGCGCGAGGAGCU____GUAGGUGUGGCCGCUGUGGUGUCGGUGGCCAAAGUUGCAACAAAACUGAAACUUUGGACUGGCAAAAAU ...................((.((.........((((.(.(((((((((......))))))))).).))))..((((........))))..)).))...... (-22.87 = -23.53 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:41 2006