Locus 2573

Sequence ID 3R_DroMel_CAF1
Location 6,959,153 – 6,959,251
Length 98
Max. P 0.590504
window4199

overview

Window 9

Location 6,959,153 – 6,959,251
Length 98
Sequences 5
Columns 98
Reading direction forward
Mean pairwise identity 92.41
Mean single sequence MFE -24.18
Consensus MFE -18.22
Energy contribution -18.66
Covariance contribution 0.44
Combinations/Pair 1.10
Mean z-score -1.74
Structure conservation index 0.75
SVM decision value 0.11
SVM RNA-class probability 0.590504
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6959153 98 + 27905053
CCAAUGGAAUUGGCUUCGUUGAGUGAUGAAGGCGGCGGCGGUGGCGGGGACGGAAAGGUAAAUAAAGAAAAGAGCUAAGCUACACUGCAAACAAAAAC
.........(((.(((((((....))))))).)))..((((((.((....))....................(((...))).)))))).......... ( -23.10)
>DroSec_CAF1 8348 95 + 1
CCAAUAGAAUUGGCUUCGUUGAGUGAUGAAGGCG---GCGGUGGCGCGGGCGGAAAGGUAAAUAAACAAAAGAGCUAAGCUACACUGCAAACAAAAAC
(((((...)))))(((((((....)))))))(((---(..(((((...(((......((......))......)))..))))).)))).......... ( -24.90)
>DroSim_CAF1 8392 95 + 1
CCAAUGGAAUUGGCUUCGUUGAGUGAUGAAGGCG---GCGGUGGCGCUGGCGGAAAGGUUAAUAAACAAAAGAGCUAAGCUACACUGCAAACAAAAAC
..........((.(((((((....))))))).))---((((((..((((((......(((....)))......))).)))..)))))).......... ( -26.80)
>DroEre_CAF1 6696 95 + 1
CCAGUGGAAUUGGCUGAGUUGAGUGAUAAAGGCG---GUGGUGGCGCGGGCGGAAAGGUAAAUAAACAAAAGAGCUAAGCUACACUGCAAACAGAAAC
.((((.......))))...............(((---(((.((((...(((......((......))......)))..)))))))))).......... ( -21.80)
>DroYak_CAF1 9351 95 + 1
CCAAUAGAAUUGGCUUUGUUGAGUGAUGAAGGCG---GUGGUGGCGCGGGCGGAAAGGUAAAUAAACAAAAGAGCUAAGCUACACUGCAAACAGAAGC
(((((...)))))(((..((....))..)))(((---(((.((((...(((......((......))......)))..)))))))))).......... ( -24.30)
>consensus
CCAAUGGAAUUGGCUUCGUUGAGUGAUGAAGGCG___GCGGUGGCGCGGGCGGAAAGGUAAAUAAACAAAAGAGCUAAGCUACACUGCAAACAAAAAC
...........(.(((((((....))))))).)....((((((((...(((......((......))......)))..))..)))))).......... (-18.22 = -18.66 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:39 2006