Locus 2572

Sequence ID 3R_DroMel_CAF1
Location 6,957,901 – 6,957,995
Length 94
Max. P 0.922370
window4197 window4198

overview

Window 7

Location 6,957,901 – 6,957,995
Length 94
Sequences 5
Columns 94
Reading direction forward
Mean pairwise identity 95.64
Mean single sequence MFE -30.18
Consensus MFE -25.38
Energy contribution -25.74
Covariance contribution 0.36
Combinations/Pair 1.11
Mean z-score -1.51
Structure conservation index 0.84
SVM decision value 0.44
SVM RNA-class probability 0.737605
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6957901 94 + 27905053
ACAACGAAUGCAUGAAUUCACCGGUCUCAAGGUAAAGAACCGUGGUCUAAGUAGCCCGGAAAAGCACAGCGGUGGUAUUUACGGUGGUUUUGCC
.........(((.....((((((...(((.(((.....))).)))..((((((.((((...........))).).))))))))))))...))). ( -21.40)
>DroSec_CAF1 7093 94 + 1
ACAACGAAUGCAUGAAUUCACCGGUCUCAAGGUAAAGAACCGGGGUCUAAGUAGCCCGGAAAACCACCGCGGUGGUAUUUGCGGUGGUUUUGCC
.....((((......))))(((........)))......(((((.(......).)))))(((((((((((((......)))))))))))))... ( -34.30)
>DroSim_CAF1 7126 94 + 1
ACAACGAAUGCAUGAAUUCACCGGUCUCAAGGUAAAGAACCGGGGUCUAAGUAGCCUGGAAAACCACCGCGGUGGUAUUUGCGGUGGUUUUGCC
.....((((......)))).(((((.((........)))))))(((.......))).(((((((((((((((......))))))))))))).)) ( -33.20)
>DroEre_CAF1 5409 94 + 1
ACAACGAAUGCAUGAAUUCACCGGUCUCAAGGUAAAGAACCGGAGUCUAAGUAGCCCGGAAAACCACCGCGGUGGUAUUUGCGGUGGUUUUGCC
.....((((......)))).(((((.((........)))))))..............(((((((((((((((......))))))))))))).)) ( -32.00)
>DroYak_CAF1 8051 94 + 1
ACAACGAAUGCAUGAAUUCACCGGUCUCAAGGUAAAGAGCCGUGGUCUAAGUAGUCCGGAAAACCACUGCGGUGGUAUUGGCGGUGGUUUUGCC
.....((((......))))..(((.(((........)))))).((.((....)).))(((((((((((((.(......).))))))))))).)) ( -30.00)
>consensus
ACAACGAAUGCAUGAAUUCACCGGUCUCAAGGUAAAGAACCGGGGUCUAAGUAGCCCGGAAAACCACCGCGGUGGUAUUUGCGGUGGUUUUGCC
.....((((......)))).((((.(((..(((.....)))(....)...).)).))))(((((((((((((......)))))))))))))... (-25.38 = -25.74 +   0.36)

alignment

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secondary structure

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dotplot

Postscript

Window 8

Location 6,957,901 – 6,957,995
Length 94
Sequences 5
Columns 94
Reading direction reverse
Mean pairwise identity 95.64
Mean single sequence MFE -27.24
Consensus MFE -24.56
Energy contribution -25.24
Covariance contribution 0.68
Combinations/Pair 1.07
Mean z-score -1.49
Structure conservation index 0.90
SVM decision value 1.15
SVM RNA-class probability 0.922370
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6957901 94 - 27905053
GGCAAAACCACCGUAAAUACCACCGCUGUGCUUUUCCGGGCUACUUAGACCACGGUUCUUUACCUUGAGACCGGUGAAUUCAUGCAUUCGUUGU
.(((....(((((...........((((((.(((...((....)).))).))))))((((......)))).)))))......)))......... ( -17.20)
>DroSec_CAF1 7093 94 - 1
GGCAAAACCACCGCAAAUACCACCGCGGUGGUUUUCCGGGCUACUUAGACCCCGGUUCUUUACCUUGAGACCGGUGAAUUCAUGCAUUCGUUGU
((.(((((((((((..........)))))))))))))(((((....)).)))((((.(((......)))))))..((((......))))..... ( -32.20)
>DroSim_CAF1 7126 94 - 1
GGCAAAACCACCGCAAAUACCACCGCGGUGGUUUUCCAGGCUACUUAGACCCCGGUUCUUUACCUUGAGACCGGUGAAUUCAUGCAUUCGUUGU
((.(((((((((((..........))))))))))))).((((....)).))(((((.(((......)))))))).((((......))))..... ( -31.40)
>DroEre_CAF1 5409 94 - 1
GGCAAAACCACCGCAAAUACCACCGCGGUGGUUUUCCGGGCUACUUAGACUCCGGUUCUUUACCUUGAGACCGGUGAAUUCAUGCAUUCGUUGU
((.(((((((((((..........)))))))))))))..((..........(((((.(((......)))))))).........))......... ( -31.61)
>DroYak_CAF1 8051 94 - 1
GGCAAAACCACCGCCAAUACCACCGCAGUGGUUUUCCGGACUACUUAGACCACGGCUCUUUACCUUGAGACCGGUGAAUUCAUGCAUUCGUUGU
(((.........))).....((((...(((((((...(.....)..)))))))(((((........))).)))))).................. ( -23.80)
>consensus
GGCAAAACCACCGCAAAUACCACCGCGGUGGUUUUCCGGGCUACUUAGACCCCGGUUCUUUACCUUGAGACCGGUGAAUUCAUGCAUUCGUUGU
((.(((((((((((..........))))))))))))).(((..........((((.((((......)))))))).((((......))))))).. (-24.56 = -25.24 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:38 2006