Locus 2571

Sequence ID 3R_DroMel_CAF1
Location 6,956,366 – 6,956,464
Length 98
Max. P 0.678383
window4196

overview

Window 6

Location 6,956,366 – 6,956,464
Length 98
Sequences 6
Columns 103
Reading direction reverse
Mean pairwise identity 86.62
Mean single sequence MFE -30.02
Consensus MFE -23.38
Energy contribution -23.55
Covariance contribution 0.17
Combinations/Pair 1.29
Mean z-score -2.41
Structure conservation index 0.78
SVM decision value 0.30
SVM RNA-class probability 0.678383
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6956366 98 - 27905053
-CAUUGUUGCAUA----GUUCGUGCAGCAAGUGCUUGUUGCAAAUAAAUUGCAUUUGCACUUAAAGCAUCGUCAAUAUGGCAGCUGUUGCUAUUCGUUGUUCG
-....(((((((.----....)))))))((((((....(((((.....)))))...))))))..((((.((.....(((((((...))))))).)).)))).. ( -28.20)
>DroSec_CAF1 5593 98 - 1
-CAUUGUUGCAUA----GUUCGUGCAGCAAGUGCUUGUUGCAAAUAAAUUGCAUUUGCACUUAAAGCAUCGUCAAUGUGGCAGCUGUUGCUACUCGUUGUUCG
-....(((((((.----....)))))))((((((....(((((.....)))))...))))))..((((.((.....(((((((...))))))).)).)))).. ( -30.00)
>DroSim_CAF1 5619 98 - 1
-CAUUGUUGCAUA----GUUCGUGCAGCAAGUGCUUGUUGCAAAUAAAUUGCAUUUGCACUUAAAGCAUCGUCAAUGUGGCAGCUGUUGCUACUCGUUGUUCG
-....(((((((.----....)))))))((((((....(((((.....)))))...))))))..((((.((.....(((((((...))))))).)).)))).. ( -30.00)
>DroEre_CAF1 3943 98 - 1
-CAUUGUUGCAUA----GUUCGUGCAGCAAGUGCUUGUUGCAAAUAAAUUGCAUUUGCACUUAAAGCAUCGUCCAUGUGGCAGCUGUUGCCACUCGUUGUUCG
-....(((((((.----....)))))))((((((....(((((.....)))))...))))))..((((.((.....(((((((...))))))).)).)))).. ( -32.30)
>DroWil_CAF1 1925 98 - 1
UCGCUCUUGCUUUUUGUGAGUGUGUGGCAAAUGUUUGCUGCAAAUAAAUUGCAUUUGCGCUUUAAAUGUCCUCCAUGUGGCAGCUGUUGCAGUGAG-----UG
.(((...(((..(((((.....((..((((....))))..)).)))))..)))...)))...........(((..((..((....))..))..)))-----.. ( -27.30)
>DroYak_CAF1 6526 98 - 1
-CAUUGUUGCAUA----GUUCGUGCAGCAAGUGCUUGUUGCAAAUAAAUUGCAUUUGCACUUAAAACAUCGUCAAUGUGGCAGCUGUUGCCACUCGUUGUUCG
-....(((((((.----....)))))))((((((....(((((.....)))))...))))))..((((.((.....(((((((...))))))).)).)))).. ( -32.30)
>consensus
_CAUUGUUGCAUA____GUUCGUGCAGCAAGUGCUUGUUGCAAAUAAAUUGCAUUUGCACUUAAAGCAUCGUCAAUGUGGCAGCUGUUGCUACUCGUUGUUCG
.....(((((((.........)))))))((((((....(((((.....)))))...))))))..((((.((.....(((((((...))))))).)).)))).. (-23.38 = -23.55 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:36 2006