Locus 2569

Sequence ID 3R_DroMel_CAF1
Location 6,955,588 – 6,955,682
Length 94
Max. P 0.985651
window4194

overview

Window 4

Location 6,955,588 – 6,955,682
Length 94
Sequences 6
Columns 115
Reading direction forward
Mean pairwise identity 75.91
Mean single sequence MFE -19.70
Consensus MFE -10.80
Energy contribution -11.67
Covariance contribution 0.86
Combinations/Pair 1.16
Mean z-score -2.53
Structure conservation index 0.55
SVM decision value 2.01
SVM RNA-class probability 0.985651
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6955588 94 + 27905053
UCGCCUUGCAACUUGAUUCAAUUAAGUUUCCUGAUUAUUUUAGCUACAAAAAA--AUGA--UACCAAAAAAAAAGGCCACAAGGC-----------CCACCUCUUUUUC------
..((((((.((((((((...)))))))).(((.((((((((.........)))--))))--)...........)))...))))))-----------.............------ ( -14.70)
>DroVir_CAF1 79859 103 + 1
CUGCCCGGUAACUUGAUUCAAUUAAGUUGCCUGAUUAUUUUUACCACAAAAAA--GUA-CAAAUAUAA--AUAAA--UACAGAA-----AAAGUAUGCCCCCGUUUUUUUUUUUU
......(((((((((((...)))))))))))....(((((.(((.........--)))-.)))))...--.....--...((((-----((((.(((....))).)))))))).. ( -14.70)
>DroSec_CAF1 4804 93 + 1
UCGCCUUGCAACUUGAUUCAAUUAAGUUGCCUGAUUAUUUUAGCUACAAAAAA--AUGA--UACCAAAA-AAAAGGCCACAAGGC-----------CCACCCGUCUUCC------
..(((((((((((((((...))))))))))...((((((((.........)))--))))--).......-..)))))...(((((-----------......)))))..------ ( -20.60)
>DroSim_CAF1 4830 92 + 1
UCGCCUUGCAACUUGAUUCAAUUAAGUUGCCUGAUUAUUUUAGCUACAAAAAA--AUGA--UACCAAAA--AAAGGCCACAAGGC-----------CCAACUCUUUUCC------
..((((((.((((((((...))))))))((((.((((((((.........)))--))))--).......--..))))..))))))-----------.............------ ( -19.20)
>DroEre_CAF1 3136 105 + 1
UCGCCUUGCAACUUGAUUCAAUUAAGUUGCCUGAUUAUUUUAGCUAAAAAAAAAAGUGA--UACCUAA--AAAAGGCCAAAAGGCUGGCGAAAUAACCACCUCUUUUUU------
(((((..((((((((((...))))))))))...((((((((...........)))))))--)......--....((((....)))))))))..................------ ( -24.50)
>DroYak_CAF1 5690 105 + 1
UCGCCUUGCAACUUGAUUCAAUUAAGUUGCCUGAUUAUUUUAGCUACAAAAAA--AUGA--UACCAAAUAAAAAGGGCACAGAGCUGGCGAAAUAUCCACCUCUUUUUU------
..(((((((((((((((...))))))))))...((((((((.........)))--))))--)...........)))))..((((.(((........))).)))).....------ ( -24.50)
>consensus
UCGCCUUGCAACUUGAUUCAAUUAAGUUGCCUGAUUAUUUUAGCUACAAAAAA__AUGA__UACCAAAA_AAAAGGCCACAAGGC___________CCACCUCUUUUUC______
..(((((((((((((((...))))))))))((((.....)))).....................................))))).............................. (-10.80 = -11.67 +   0.86)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:34 2006