| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 6,953,779 – 6,953,883 |
| Length | 104 |
| Max. P | 0.760073 |
| Location | 6,953,779 – 6,953,883 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 80.69 |
| Mean single sequence MFE | -30.07 |
| Consensus MFE | -24.31 |
| Energy contribution | -23.87 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.81 |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.760073 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6953779 104 - 27905053 GGUCAUCAGGUGACCGUUAUUAAUGCCUUCAAGAACAAGGAGACACCAAAUAUGCGCUUUAUUGAGGCCCUCAAAGCGCACGAAUUCGCAGACGGUGUGUAUUA-------- ((((((...)))))).....((((((((((........))))(((((.....(((((((...((((...)))))))))))((....)).....)))))))))))-------- ( -30.70) >DroSec_CAF1 2988 104 - 1 GGUCACCAGGUGACCGUUAUCAAUGCCUUCAAGAACAAGGAGACGCCAAACAUGCGCUUUAUUGAGGCACUCAAAGCGCACGACUUUGCUGAAGGUGUGCAUUA-------- ((((((...)))))).......(((((((((.......(....)((......(((((((...((((...))))))))))).......)))))))))))......-------- ( -32.52) >DroSim_CAF1 2985 104 - 1 GGUCACCAGGUGACCGUUAUCAAUGCCUUCAAGAACAAGGAGACGCCAAACAUGCGCUUUAUUGAGGCACUCAAAGCGCACGACUUUGCUGAAGGUGUGCAUUA-------- ((((((...)))))).......(((((((((.......(....)((......(((((((...((((...))))))))))).......)))))))))))......-------- ( -32.52) >DroEre_CAF1 1358 104 - 1 GGUCACCAGGUGACUGUUAUUAAUACCUUUAAGAACAAGGAGACGCCAAACAUGCGCUUCAUUGAGGCCCUCAAAGCGCAUGACUACGCAGAAGGUAUGCAUUG-------- ((((((...)))))).......((((((((........(....)((....(((((((((...((((...))))))))))))).....)).))))))))......-------- ( -32.50) >DroYak_CAF1 3012 104 - 1 GGUCACCAGGUGACCGUUAUCAAUGCCUUUAAGAACAAGGAGACCCCAAACAUGCGCUUCAUUGAGGCCCUCGGAGCGCACAAAUACGCAGAAGGUAUGCAUUA-------- ((((((...)))))).......((((((((........((.....)).....((((((((...(((...)))))))))))..........))))))))......-------- ( -30.00) >DroAna_CAF1 2334 112 - 1 GGUCACCAGGUGACUGUUAUAAACACCUUCAGGAAUAAGCCGUACCCGAACAUAAGGUUCAUCGAAGCCGUUAAAGUUCAGGAAUACAGCGAUGGUAUGUAAUCUAUUUUUU ((((((...))))))((((((.((.((....)).....((.(((((.((((....((((......))))......)))).))..))).))....)).))))))......... ( -22.20) >consensus GGUCACCAGGUGACCGUUAUCAAUGCCUUCAAGAACAAGGAGACGCCAAACAUGCGCUUCAUUGAGGCCCUCAAAGCGCACGAAUACGCAGAAGGUAUGCAUUA________ ((((((...)))))).......((((((((........(....)........(((((((...((((...)))))))))))..........)))))))).............. (-24.31 = -23.87 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:32 2006