Locus 2566

Sequence ID 3R_DroMel_CAF1
Location 6,953,641 – 6,953,748
Length 107
Max. P 0.986594
window4191

overview

Window 1

Location 6,953,641 – 6,953,748
Length 107
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 76.81
Mean single sequence MFE -27.72
Consensus MFE -17.19
Energy contribution -18.08
Covariance contribution 0.89
Combinations/Pair 1.35
Mean z-score -2.58
Structure conservation index 0.62
SVM decision value 2.05
SVM RNA-class probability 0.986594
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6953641 107 - 27905053
AUAAAUCUAUUUGCUCGCAGAGAUGAUGAGUUUGCUGAAUGUGCCACUAUUGUGGCAGCAGCUCAAUGCCAUGGAUUACAUAUUAAACAAAUUCAUCGAUGUAACUA
....(((..((((....))))...((((((((((...((((((((((....))))).(((......)))..........)))))...)))))))))))))....... ( -27.90)
>DroVir_CAF1 77099 104 - 1
AUCAA---UUUCAUUUUCAGACAUGCUUAAUGCGAUGAUUGCGCCUUCUUUUUGGCAGAAACAUAAGACUUUCAGUUGGAUGUUGGAAGUUAUCGCCGAAUGCGUAU
.....---..............((((.....(((((((((.((((........)))...(((((..(((.....)))..))))).).))))))))).....)))).. ( -25.30)
>DroSec_CAF1 2855 107 - 1
AUAAAUCUUUUUGUCUACAGAAAUGAUGACGUUGCUGAAUGUGCCUCUAUUGUGGCAGCAGCUCAAUGCCAUAGAUUACAUAUUAAACAAAUUCAUCGAUACAACAA
....(((((((((....)))))).(((((..(((...((((((......((((((((.........))))))))....))))))...)))..))))))))....... ( -23.00)
>DroSim_CAF1 2849 107 - 1
AUAAAUCUUUUUGUCUACAGAGAUGAUGAGUUUGCUGAAUGUGCCUCUAUUGUGGCAGCAGCUCAAUGCCAUAGAUUACAUAUUAAACAAAUUCAUCGAUACAACAA
....(((((((((....)))))).((((((((((...((((((......((((((((.........))))))))....))))))...)))))))))))))....... ( -28.20)
>DroEre_CAF1 1222 107 - 1
AUAAAUCUGUUUACCCACAGAGAUGAUGAAUUUGCUAAAUGUGCCACUAUUGUGGCAGCAGCUCAAUGCCAUGGAUUACAUAUUGGACAAAUUCAUCGAGACUACAC
.....(((((......)))))..((((((((((((((((((((((((....))))).(((......)))........)))).)))).)))))))))))......... ( -33.20)
>DroYak_CAF1 2871 105 - 1
AUAAAUC--UUUACCCACAGAGAUGAUGAGUUUGCUGAAUGUGCCUCUAUUGUGGCAGCAGCUCAAUGCCAUGGAUUACAUAUUGGACAAAUUCAUCGAGACUACAC
....(((--(((......))))))(((((((((((..((((((..(((...((((((.........))))))))).))))).)..).)))))))))).......... ( -28.70)
>consensus
AUAAAUCUUUUUACCCACAGAGAUGAUGAGUUUGCUGAAUGUGCCUCUAUUGUGGCAGCAGCUCAAUGCCAUGGAUUACAUAUUAAACAAAUUCAUCGAUACAACAA
.......................(((((((((((.(.((((((......((((((((.........))))))))....)))))).).)))))))))))......... (-17.19 = -18.08 +   0.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:31 2006