| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 6,936,102 – 6,936,215 |
| Length | 113 |
| Max. P | 0.997383 |
| Location | 6,936,102 – 6,936,215 |
|---|---|
| Length | 113 |
| Sequences | 4 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 93.91 |
| Mean single sequence MFE | -25.67 |
| Consensus MFE | -24.96 |
| Energy contribution | -24.96 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -3.49 |
| Structure conservation index | 0.97 |
| SVM decision value | 2.85 |
| SVM RNA-class probability | 0.997383 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6936102 113 - 27905053 ACCGCAAAAAAAUUUCAUCGCUCAUACAUAUCCGAGUAUGUGUGAGCUGGACUUGUCCUUUUUCCCUG-----CCCCUUCCCCUUUCACGUUCACGACCAUGUCCAUUUCGUGUCUCC ...(((.............((((((((((((....)))))))))))).(((....)))........))-----)............((((.....(((...))).....))))..... ( -26.30) >DroSec_CAF1 84767 112 - 1 ACCGCAAA-AAAUUUCAUCGCUCAUACAUAUCCGAGUAUGUGUGAGCUGGACUUGUCCUUUUUCCCUA-----CCCCUUCCCCUCUCACGUUCACGACCAUGUCCAUUCCGUGUCUCC ..(((...-..........((((((((((((....))))))))))))(((((..(((...........-----......................)))...)))))....)))..... ( -25.11) >DroSim_CAF1 86059 112 - 1 ACCGCAAA-AAAUUUCAUCGCUCAUACAUAUCCGAGUAUGUGUGAGCUGGACUUGUCCUUUUUCCCUA-----CCCCUGCCCCUCUCACGUUCACGACCAUGUCCAUUUCGUGUCUCC ...(((..-..........((((((((((((....)))))))))))).(((....)))..........-----....)))......((((.....(((...))).....))))..... ( -26.30) >DroEre_CAF1 86640 117 - 1 ACCGCAAA-AAAUUUCAUCGCUCAUACAUAUCCGAGUAUGUGUGAGCUGGACUUGUCCUUUUCUCCUCCCAUUCCCAUUCCCCUUUCACGUUCACGACCAUGUCCAUUUCGUGUCUCC ..(((...-..........((((((((((((....))))))))))))(((((..(((......................................)))...)))))....)))..... ( -24.96) >consensus ACCGCAAA_AAAUUUCAUCGCUCAUACAUAUCCGAGUAUGUGUGAGCUGGACUUGUCCUUUUUCCCUA_____CCCCUUCCCCUCUCACGUUCACGACCAUGUCCAUUUCGUGUCUCC ..(((..............((((((((((((....))))))))))))(((((..(((......................................)))...)))))....)))..... (-24.96 = -24.96 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:21 2006