| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 996,406 – 996,500 |
| Length | 94 |
| Max. P | 0.576543 |
| Location | 996,406 – 996,500 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 78.97 |
| Mean single sequence MFE | -23.22 |
| Consensus MFE | -16.77 |
| Energy contribution | -17.83 |
| Covariance contribution | 1.06 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.07 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.576543 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 996406 94 - 27905053 AGGAGAGGAGGAGUCCAAGGUGUGCGAACCUGGAAUGUGGGCCAGCUUUGGC---AGGGGGAUUCAAACUUGGCCAUAAAACUUUCGCCGCAUCUUG .((...(((((..((((.(((......))))))).....((((((.(((((.---........))))).))))))......))))).))........ ( -27.20) >DroSec_CAF1 41287 78 - 1 ----------------AAGGUGUGCGAACCUGAAAUGUGGGCCAGCUUUGGC---AGGGGGAAUCAAACUUGGCCAUAAAACUUUCGCCGCAUCUUG ----------------((((((((((((...........((((((.(((((.---........))))).))))))........)))).)))))))). ( -23.21) >DroSim_CAF1 43661 78 - 1 ----------------AAGGUGUGCGAACCUGAAAUGUGGGCCAGCUUUGGC---AGGGGGAUUCAAACUUGGCCAUAAAACUUUCGCCGCAUCUUG ----------------((((((((((((...........((((((.(((((.---........))))).))))))........)))).)))))))). ( -23.31) >DroEre_CAF1 43559 78 - 1 ----------------AAGGUGUGGGAGCUUGAAAUGUGGGCCAGCUUGGGC---AAAAGGAUUCAAACUUGGCCAUAAAACUUUCGCCGCAUCUUG ----------------(((((((((.....(((((.((.((((.((....))---..(((........))))))).....)))))))))))))))). ( -23.40) >DroWil_CAF1 48280 78 - 1 ----------------AU---GGAAAAGAUGAAAAUGUGGGCCAACUUCUGUUGAAAGGAAAUUCAAACUUGGCCAUAAAACUUUUGCCACAGCUUC ----------------.(---(((((((((....))...((((((......(((((......)))))..))))))......))))).)))....... ( -16.40) >DroYak_CAF1 45895 78 - 1 ----------------AAGGUGUGCGAACUUGAAAUGUGGGCCAGCUUUGGC---CGGAGGAUUCAAACUUGGCCACAAAACUUUCGCCGCAUCUUG ----------------((((((((((((.......(((((.((((.((((.(---(...))...)))).))))))))).....)))).)))))))). ( -25.80) >consensus ________________AAGGUGUGCGAACCUGAAAUGUGGGCCAGCUUUGGC___AGGGGGAUUCAAACUUGGCCAUAAAACUUUCGCCGCAUCUUG ................((((((((((((.......(((((.((((.(((((............))))).))))))))).....)))).)))))))). (-16.77 = -17.83 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:46 2006