| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 6,934,588 – 6,934,681 |
| Length | 93 |
| Max. P | 0.895507 |
| Location | 6,934,588 – 6,934,681 |
|---|---|
| Length | 93 |
| Sequences | 4 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 91.07 |
| Mean single sequence MFE | -36.75 |
| Consensus MFE | -28.08 |
| Energy contribution | -27.95 |
| Covariance contribution | -0.13 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.64 |
| Structure conservation index | 0.76 |
| SVM decision value | 0.99 |
| SVM RNA-class probability | 0.895507 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6934588 93 - 27905053 GGCUGAGCCUUCCUUUCGGGCACACGUGGCGUAUGUGUAAUGCGAGUCUGUGUGUGUGUGUGUGGGUGGAGGAGCAGCUGCUUGUGCG-UCGAG (((((..((((((((.((.(((((((..((((((.....)))))...)..))))))).))...))).)))))..)))))((....)).-..... ( -38.00) >DroSec_CAF1 83242 88 - 1 GGCUGAGCCUUCCUUUCGGGCACAAGUGGCGUAUGUGUAAUGCGAGUCUGUGU------GUGUGGGUGGAGGAGCAGCUGCUUGUGCAAAUGAG (((((..(((((((..((.(((((..(..(((((.....))))).)..)))))------.))..)).)))))..)))))((....))....... ( -34.50) >DroSim_CAF1 84525 87 - 1 GGCUGAGCCUUCCUUUCGGGCACACGUGGCGUAUGUGUAAUGCGAGUCUGUGU------GUGUGGGUGGAGGAGCAGCUGCUUGUGCG-UCGAG (((((..(((.((.((((.(((((((...(((((.....)))))....)))))------)).)))).)))))..)))))((....)).-..... ( -35.70) >DroEre_CAF1 85091 90 - 1 GGCUGAGCCUUCGUUCCGGGCACACGUGGCGUAUGUGCAAUGCGAGUCUGUGUGU---UGUGUGGAUGGAGGAGCAGCUGCUUGUGCG-UUGAG (((((..(((((((.(((.(((((((..((((((.....)))))...)..)))).---))).))))))))))..)))))((....)).-..... ( -38.80) >consensus GGCUGAGCCUUCCUUUCGGGCACACGUGGCGUAUGUGUAAUGCGAGUCUGUGU______GUGUGGGUGGAGGAGCAGCUGCUUGUGCG_UCGAG (((((..(((((..((((.(((((((...(((((.....)))))....)))))......)).)))).)))))..)))))((....))....... (-28.08 = -27.95 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:16 2006