Locus 2558

Sequence ID 3R_DroMel_CAF1
Location 6,933,668 – 6,933,768
Length 100
Max. P 0.554851
window4174

overview

Window 4

Location 6,933,668 – 6,933,768
Length 100
Sequences 5
Columns 100
Reading direction reverse
Mean pairwise identity 99.40
Mean single sequence MFE -25.40
Consensus MFE -25.64
Energy contribution -25.40
Covariance contribution -0.24
Combinations/Pair 1.03
Mean z-score -1.20
Structure conservation index 1.01
SVM decision value 0.04
SVM RNA-class probability 0.554851
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6933668 100 - 27905053
GCAGUUGUAGUUGUUGCUACUGUACUUUACACAGUUGUUUGGCUGCUUUUUGCACGCUCUUAAGCAUCGCGCGGGCAUGAAACUUACUUCAUUUGCGUUU
((((..(((((((..((.(((((.......))))).)).)))))))...))))..(((....)))...((((((..(((((......))))))))))).. ( -26.20)
>DroSec_CAF1 82307 100 - 1
GCAGUUGUAGUUGUUGCUACUGUACUUUACACAGUUGUUUGGCUGCUUUUUGCACGCUCUUAAGCAUCGCGCGGGCAUGAAACUUACUUCAUUUGCGUUU
((((..(((((((..((.(((((.......))))).)).)))))))...))))..(((....)))...((((((..(((((......))))))))))).. ( -26.20)
>DroSim_CAF1 83602 100 - 1
GCAGUUGUAGUUGUUGCUACUGUACUUUACACAGUUGUUUGGCUGCUUUUUGCACGCUCUUAAGCAUCGCGCGGGCAUGAAACUUACUUCAUUUGCGUUU
((((..(((((((..((.(((((.......))))).)).)))))))...))))..(((....)))...((((((..(((((......))))))))))).. ( -26.20)
>DroEre_CAF1 84166 100 - 1
GUAGUUGUAGUUGUUGCUACUGUACUUUACACAGUUGUUUGGCUGCUUUUUGCACGCUCUUAAGCAUCGCGCGGGCAUGAAACUUACUUCAUUUGCGUUU
((((..(((((((..((.(((((.......))))).)).)))))))...))))..(((....)))...((((((..(((((......))))))))))).. ( -24.20)
>DroYak_CAF1 84273 100 - 1
GUAGUUGUAGUUGUUGCUACUGUACUUUACACAGUUGUUUGGCUGCUUUUUGCACGCUCUUAAGCAUCGCGCGGGCAUGAAACUUACUUCAUUUGCGUUU
((((..(((((((..((.(((((.......))))).)).)))))))...))))..(((....)))...((((((..(((((......))))))))))).. ( -24.20)
>consensus
GCAGUUGUAGUUGUUGCUACUGUACUUUACACAGUUGUUUGGCUGCUUUUUGCACGCUCUUAAGCAUCGCGCGGGCAUGAAACUUACUUCAUUUGCGUUU
((((..(((((((..((.(((((.......))))).)).)))))))...))))..(((....)))...((((((..(((((......))))))))))).. (-25.64 = -25.40 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:15 2006