| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 6,931,372 – 6,931,490 |
| Length | 118 |
| Max. P | 0.987553 |
| Location | 6,931,372 – 6,931,490 |
|---|---|
| Length | 118 |
| Sequences | 5 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 94.63 |
| Mean single sequence MFE | -36.46 |
| Consensus MFE | -34.26 |
| Energy contribution | -34.70 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.94 |
| SVM decision value | 2.08 |
| SVM RNA-class probability | 0.987553 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6931372 118 - 27905053 CUGGCCGUCGCAUUGAAAAUUAGUGACAUGGCGCAUGCAUUAGUUAGAGCUCCAUGGCAGUCGAUGGCAAUGCAAAUCAUUGUCAUUGCAGGGCGCAACCACAUGCACACACCUCC-UC (((((((((((..(....)...)))))((((.((..((....))....)).)))))))...(((((((((((.....)))))))))))))).(.(((......))).)........-.. ( -33.20) >DroSec_CAF1 80015 113 - 1 CUGGCCGUCGCAUUGAAAAUUAGUGACAUGGCGCAUGCAUUAGUUAGAGCUCGAUGGCAGUCAAUGGCAAUGCAAAUCAUUGUCAUUGCAGGGCGCAACCACAUGCAA-----UCC-CC ...(((((((..((...((((((((.((((...)))))))))))).))...))))))).(.(((((((((((.....)))))))))))).(((.(((......)))..-----.))-). ( -38.00) >DroSim_CAF1 81296 113 - 1 CUGGCCGUCGCAUUGAAAAUUAGUGACAUGGCGCAUGCAUUAGUUAGAGCUCGAUGGCAGUCGAUGGCAAUGCAAAUCAUUGUCAUUGCAGGGCGCAACCACAUGCAA-----UCC-CC ...(((((((..((...((((((((.((((...)))))))))))).))...))))))).(.(((((((((((.....)))))))))))).(((.(((......)))..-----.))-). ( -37.70) >DroEre_CAF1 81915 114 - 1 CUGGCCGUCGCAUUGAAAAUUAGUGACAUGGCGCAUGCAUUAGUAAGAGCUCGAUGGCAGUCGAUGGCAAUGCAAAUCAUUGUCAUUGCAGGGCGCAACCACAUGCAA-----ACCUCC ...(((((((..((....(((((((.((((...)))))))))))..))...))))))).(.(((((((((((.....))))))))))))(((..(((......)))..-----.))).. ( -35.70) >DroYak_CAF1 81998 113 - 1 CUGGCCGUCGCAUUGAAAAUUAGUGACAUGGGGCAUGCAUUAGUAGUAGCUCGAUGGCAGUCGAUGGCAAUGCAAAUCAUUGUCAUUGCAGGGCGCAACCACAUGCAA-----UCC-CC ...(((((((..(((...(((((((.((((...)))))))))))..)))..))))))).(.(((((((((((.....)))))))))))).(((.(((......)))..-----.))-). ( -37.70) >consensus CUGGCCGUCGCAUUGAAAAUUAGUGACAUGGCGCAUGCAUUAGUUAGAGCUCGAUGGCAGUCGAUGGCAAUGCAAAUCAUUGUCAUUGCAGGGCGCAACCACAUGCAA_____UCC_CC ((((((((((.......((((((((.((((...))))))))))))......)))))))...(((((((((((.....))))))))))))))...(((......)))............. (-34.26 = -34.70 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:11 2006