Locus 2555

Sequence ID 3R_DroMel_CAF1
Location 6,931,067 – 6,931,158
Length 91
Max. P 0.946501
window4168

overview

Window 8

Location 6,931,067 – 6,931,158
Length 91
Sequences 3
Columns 91
Reading direction forward
Mean pairwise identity 90.11
Mean single sequence MFE -33.20
Consensus MFE -29.50
Energy contribution -29.83
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -2.64
Structure conservation index 0.89
SVM decision value 1.36
SVM RNA-class probability 0.946501
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6931067 91 + 27905053
GACUGUCGUCAUAAUUUGUCGGCCAAGUUUAUUGCAGCGCAUAAAUCGGUUGGCAUUGAUGACAGCCAGGCUGGCAGGCUGGCAACCAGGG
...((((((((.....((((((((..((((((.((...)))))))).)))))))).))))))))(((((.(.....).)))))........ ( -33.70)
>DroSec_CAF1 79720 91 + 1
GACUGUCGUCAUAAUUUGUCGGCCAAGUUUAUUGCAGCGCAUAAAUCGGUUGGCAUUGAUGACAGCCUGGCUGGCAGGCUGGCAAGCAGGG
..(((((((((.....((((((((..((((((.((...)))))))).)))))))).)))))))))((((((..(....)..))...)))). ( -35.50)
>DroEre_CAF1 81622 82 + 1
GACUGUCGUCAUAAUUUGUCGGCCAAGUUUAUUGCAGAGCAUAAAUCGGUUGGCAUUGAUGACAGGCAGGCUGGCUGGCUGG---------
..(((((((((.....((((((((..((((((.((...)))))))).)))))))).))))))))).(((.(.....).))).--------- ( -30.40)
>consensus
GACUGUCGUCAUAAUUUGUCGGCCAAGUUUAUUGCAGCGCAUAAAUCGGUUGGCAUUGAUGACAGCCAGGCUGGCAGGCUGGCAA_CAGGG
..(((((((((.....((((((((..((((((.((...)))))))).)))))))).)))))))))....((..(....)..))........ (-29.50 = -29.83 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:09 2006