| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 6,927,862 – 6,927,971 |
| Length | 109 |
| Max. P | 0.608147 |
| Location | 6,927,862 – 6,927,971 |
|---|---|
| Length | 109 |
| Sequences | 5 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 85.11 |
| Mean single sequence MFE | -29.54 |
| Consensus MFE | -22.78 |
| Energy contribution | -23.42 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.608147 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6927862 109 - 27905053 CAUUGUAGGCAAACUGCAGUGUCUGGACGGUCAGCAAAAUCCUGACAACUAGGCGAAUGCGCAAUGUUCUUGCAAAGGAAUGAUGACUUAUG----------AAUUGAAGCUAAGGAUU ((((((((.....)))))))).((((...(((((.......)))))..))))(((....)))...((((((((.((...((((....)))).----------..))...)).)))))). ( -25.60) >DroSec_CAF1 76589 102 - 1 CAUUGUAGGCAAACUGCAUUGCCUGGACGGUCAUCAAAAUCCUGACAACUAGGCGAAUGCGCAAUGUUCUUGCAAAGG-------ACUUAUG----------AAUUGAAGUUCAAGACU ..(((((((((...((((((((((((...((((.........))))..)))))).))))))...))..))))))).((-------((((...----------.....))))))...... ( -29.10) >DroSim_CAF1 77772 102 - 1 CAUUGUAGGCAAACUGCAUUGCCUGGACGGUCAGCAAAAUCCUGACAACUAGGCGAAUGCGCAAUGUUCUUGCAAAGG-------ACUUAUG----------AAUUGAAGUUCAAGACU ..(((((((((...((((((((((((...(((((.......)))))..)))))).))))))...))..))))))).((-------((((...----------.....))))))...... ( -32.10) >DroEre_CAF1 78486 102 - 1 CAUUGUAGGCAAACUGCAGUGCCUGGGCGGUCAGUGAAAUCCUGACAACUAGGCGAAUGCGCAAUGUACUUGCAAACA-------AUUUAUG----------AAUUUAAGUUCAAGGCU .(((((((.....)))))))((((((...(((((.(....))))))..))))))....((((((.....)))).....-------.....((----------(((....)))))..)). ( -32.50) >DroYak_CAF1 78456 112 - 1 CAUUGUAGGCAAACUGCAGUGCCUGGACCGUCAGCGAAAUCCCGACAACUAGGCGAAUGCGCAAUGUUCUUGCAGUGG-------AUUUAUGAAUAGCUAUGAAUUGUAGUUCGAGACU (((((((((((...((((.(((((((...(((.(.(....)).)))..)))))))..))))...))..))))))))).-------.....(((((.((........)).)))))..... ( -28.40) >consensus CAUUGUAGGCAAACUGCAGUGCCUGGACGGUCAGCAAAAUCCUGACAACUAGGCGAAUGCGCAAUGUUCUUGCAAAGG_______ACUUAUG__________AAUUGAAGUUCAAGACU .(((((((.....)))))))((((((...(((((.......)))))..))))))......((((.....)))).............................................. (-22.78 = -23.42 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:07 2006