Locus 2552

Sequence ID 3R_DroMel_CAF1
Location 6,927,152 – 6,927,272
Length 120
Max. P 0.966144
window4165

overview

Window 5

Location 6,927,152 – 6,927,272
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 73.87
Mean single sequence MFE -34.30
Consensus MFE -13.46
Energy contribution -14.48
Covariance contribution 1.02
Combinations/Pair 1.10
Mean z-score -2.19
Structure conservation index 0.39
SVM decision value 1.59
SVM RNA-class probability 0.966144
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6927152 120 - 27905053
GGCAACAGAAUUCCCUUAAAACAUAUCAAACAGAUGUGGUCUUGAGUGUUGUCCUGAGCUUUUUUUUCAGUGUGCAGCUGGGAAGGGAAUACCUACUGACGGUGGUGGGAUGCCGUUGAU
((((.....((((((((....((((((.....)))))).........(((((((((((.......))))).).)))))....)))))))).((((((......)))))).))))...... ( -37.90)
>DroSec_CAF1 75895 116 - 1
GGCAACAUAAUUCCCAUAACACAUAUCAAACAACUGUGGUCUUGAG--UUGUCCUGAU--UUUUUUUCAGUGUGCAGCUGGGAAGGGAAUACCUACUGACGAUGGUGGGAUGCCGUUGAU
((((.....((((((....((((...........)))).((((.((--(((((((((.--......)))).).)))))))))).)))))).((((((......)))))).))))...... ( -36.30)
>DroSim_CAF1 77066 116 - 1
GGCAACAUAAUUCCCAUAACACAUACCAAACAAAUGUAGUUUUGAG--UUGUCCUGAG--UUUUUUUCAGUGUGCAGCUGGGAAGGGAAUACCUACUGACGAUGGUGGGAUGCCGUUGAU
((((.....((((((.....((((.........))))..((((.((--((((((((((--.....))))).).)))))).)))))))))).((((((......)))))).))))...... ( -36.20)
>DroEre_CAF1 77840 94 - 1
GGCUCCAGAG-UCCCAUAGGAAAUAUUAAACCAUAGUUUAGUACAA--UUUCCCUGAC--UUUUUCUCAGUGUGCGGCUGGGAUAGGAA---------------------UGGCGUUGAU
(((.(((...-(((....(((((((((((((....))))))))...--))))).....--....(((((((.....)))))))..))).---------------------))).)))... ( -24.80)
>DroYak_CAF1 77786 112 - 1
AG---CAGAA-UCCCAUAAGAGCUAUUAAACAAUAAAUUAGGUAAA--UUUUCCUGAG--UUUUUCUCAGUGUGCAGCUGGGAAAGGAAUAGCUACUGACGAUGGUGGGAUGGCGAUGAU
.(---(...(-((((((.(((((((((..........(((((....--....))))).--(((((((((((.....)))))))))))))))))).)).......))))))).))...... ( -36.30)
>consensus
GGCAACAGAAUUCCCAUAACACAUAUCAAACAAAUGUGGUCUUGAG__UUGUCCUGAG__UUUUUUUCAGUGUGCAGCUGGGAAGGGAAUACCUACUGACGAUGGUGGGAUGCCGUUGAU
(((.........................................................(((((((((((.....)))))))))))....((((((......))))))..)))...... (-13.46 = -14.48 +   1.02)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:06 2006