| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 6,921,679 – 6,921,775 |
| Length | 96 |
| Max. P | 0.979337 |
| Location | 6,921,679 – 6,921,775 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 79.50 |
| Mean single sequence MFE | -37.55 |
| Consensus MFE | -24.85 |
| Energy contribution | -27.43 |
| Covariance contribution | 2.58 |
| Combinations/Pair | 1.07 |
| Mean z-score | -3.29 |
| Structure conservation index | 0.66 |
| SVM decision value | 1.83 |
| SVM RNA-class probability | 0.979337 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6921679 96 + 27905053 UCGCUGGGUGGAUG--------GCUCUGCGAAAUGCAGUUAAUUUUGCAUUUUGUUUGCCACAAAUUGUUGUUUCGACAGUGGGGCAGC-----AACG--------GCCGUGGAGCA ..(((.(((.(.((--------((...(((((((((((......)))))))))))..))))....(((((((..((....))..)))))-----))).--------)))....))). ( -37.40) >DroSec_CAF1 70333 104 + 1 UCGCUUGGUGGAUGGUGGAUGGGCUCUGCGAAGUGCAGUUAAUUUUGCAUUUUGUUUGCCACAAAUUGUUGUUUCGACAGUGGGGCAGC-----AACG--------GCCGUGGAGCA ..((((..(((.((.....(((((...(((((((((((......)))))))))))..))).))..(((((((..((....))..)))))-----))))--------.)))..)))). ( -40.20) >DroSim_CAF1 70585 104 + 1 UCGCUUGGUGGAUGGUGGAUGGGCUUUGCGAAAUGCAGUUAAUUUUGCAUUUUGUUUGCCACAAAUUGCUGUUUCGACAGUGGGGCAGC-----AACG--------GCCGUGGAGCA ..((((..(((.((.....(((((...(((((((((((......)))))))))))..))).))..(((((((..((....))..)))))-----))))--------.)))..)))). ( -42.60) >DroEre_CAF1 72187 97 + 1 UCGCUUGGUGGAU-------GGGCUCUGCGAAAUGCAGUUAAUUUUGCAUUUUGUUUGCCACAAAUUGUUGUUUCGACAGUGGGGCAGC-----AACG--------GCCGUGGAGCA ..((((..(((.(-------((((...(((((((((((......)))))))))))..))).....(((((((..((....))..)))))-----))))--------.)))..)))). ( -39.70) >DroYak_CAF1 72188 106 + 1 UCGCUUGGUGGAU-------GGGCUCUGCGAAAUGCAGUUAAUUUUGCAUUUUGUUUGCCACAAAUUGUUGUUUCGACAGUGGGCCAGCG----AACGGUUGUGGAGCCGUGGAGCA (((((.(((...(-------((((...(((((((((((......)))))))))))..))).)).(((((((...)))))))..)))))))----)((((((....))))))...... ( -40.40) >DroAna_CAF1 68240 93 + 1 --------CAAAU-------CGGAUCGGCAAAAUGCAGUUAAUUUUGCAUUUAGUUUGCCACAAAGAG-UGAUUCGAAGGAGGGAAAGAGGCACGGAG--------GCCAGAGAGAU --------....(-------((((((((((((((((((......))))))....))))))((.....)-))))))))............(((......--------)))........ ( -25.00) >consensus UCGCUUGGUGGAU_______GGGCUCUGCGAAAUGCAGUUAAUUUUGCAUUUUGUUUGCCACAAAUUGUUGUUUCGACAGUGGGGCAGC_____AACG________GCCGUGGAGCA ..((((.((((..........(((...(((((((((((......)))))))))))..))).......((((((((......))))))))..................)))).)))). (-24.85 = -27.43 + 2.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:04 2006