| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 992,900 – 993,006 |
| Length | 106 |
| Max. P | 0.518796 |
| Location | 992,900 – 993,006 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 75.66 |
| Mean single sequence MFE | -36.13 |
| Consensus MFE | -21.64 |
| Energy contribution | -20.56 |
| Covariance contribution | -1.08 |
| Combinations/Pair | 1.37 |
| Mean z-score | -1.33 |
| Structure conservation index | 0.60 |
| SVM decision value | -0.03 |
| SVM RNA-class probability | 0.518796 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 992900 106 + 27905053 CUCUGGUGCGCAAGAUUCACUCCGGCAACUACACGUGUGAGCCGGAAAACAGUGCGGCAGCUUCUAUGCAGUUGCACGUCCUGAGCGGUAGGUGA----CACUAAUUAUU----- .((((.(((.((.(((....((((((.((.......))..)))))).....(((((((.((......)).)))))))))).)).))).))))...----...........----- ( -34.80) >DroPse_CAF1 50609 111 + 1 CGCUGGUGCGCAAGAUCCACUCCGGCAAUUAUACCUGCGAGCCGGAGAACAGUGCAGCGGUGUCCAUGCAGCUGCACGUGCUUAGCGGUAAGUGG----GAUUACUUAGCAUAAU .(((((.((((........(((((((..............)))))))....(((((((.((......)).))))))))))))))))(.((((((.----...)))))).)..... ( -44.64) >DroEre_CAF1 41758 111 + 1 CUCUGGUGCGCAAGAUCCACUCCGGCAACUACACGUGUGAGCCGGAAAACAGUGCGGCAGCUUCUAUGCAAUUGCACGUCCUCAGUGGUAGGUGA----CGCCAAUUAUUGCGGG ...((((((((.....((((((((((.((.......))..)))))).....((((((..((......))..)))))).......))))...))).----)))))........... ( -37.50) >DroMoj_CAF1 35992 106 + 1 CCAUAGUGCGUAAGAGCCAUUCCGGAAACUACACCUGCGAGCCGGAAAACAGUGAAGCAGUCUCCAUACAACUGCAUGUGCUUAGCGGUAAGCUA--UCAAUUACCUA------- .......((....((((((((((((...(.......)....)))))).........(((((.........))))).)).)))).))(((((....--....)))))..------- ( -24.00) >DroAna_CAF1 39914 108 + 1 CCUUAGUGCGGAAAAUACACUCCGGCAACUACACGUGCGAGCCGGAAAACAGUGCGGCCGUGUCCAUGCAACUGCAUGUCCUGAGCGGUAAGAACUAUCCCCUAACUA------- ..((((.(.(((........((((((.((.....))....))))))....(((...((((((..(((((....)))))..)...)))))....))).))))))))...------- ( -31.20) >DroPer_CAF1 50734 111 + 1 CGCUGGUGCGCAAGAUCCACUCCGGCAAUUAUACCUGCGAGCCGGAGAACAGUGCAGCGGUGUCCAUGCAGCUGCACGUGCUUAGCGGUAAGUGG----GAUUACUUAGCAUAAU .(((((.((((........(((((((..............)))))))....(((((((.((......)).))))))))))))))))(.((((((.----...)))))).)..... ( -44.64) >consensus CCCUGGUGCGCAAGAUCCACUCCGGCAACUACACCUGCGAGCCGGAAAACAGUGCAGCAGUGUCCAUGCAACUGCACGUCCUUAGCGGUAAGUGA____CACUAAUUA_______ ...((.(((...........((((((..............)))))).....((((((..((......))..)))))).......))).))......................... (-21.64 = -20.56 + -1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:45 2006