Locus 2548

Sequence ID 3R_DroMel_CAF1
Location 6,918,596 – 6,918,688
Length 92
Max. P 0.990907
window4158

overview

Window 8

Location 6,918,596 – 6,918,688
Length 92
Sequences 6
Columns 118
Reading direction forward
Mean pairwise identity 77.27
Mean single sequence MFE -25.39
Consensus MFE -15.90
Energy contribution -17.26
Covariance contribution 1.36
Combinations/Pair 1.05
Mean z-score -2.94
Structure conservation index 0.63
SVM decision value 2.24
SVM RNA-class probability 0.990907
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6918596 92 + 27905053
A-------------------GCUC--CUAUGCCAUCGCAAAAUGUUGCUUAUGAAUUAUUAUGAGCC----CCAUG-CACGCAUUUUGCAUUUGGCAACAUUUUAUGGAACCGAAUAU
.-------------------....--...(((((..(((((((((.((((((((....)))))))).----.....-...)))))))))...)))))..................... ( -22.80)
>DroEre_CAF1 69095 92 + 1
U-------------------GCUC--CUAUGCCAUCGCAAAAUGUUGCUUAUGAAUUAUUAUGAGCC----CCAUG-CACGCAUUUUGCAUUUGGCAACAUUUUAUGGAACCGAAUUU
.-------------------....--...(((((..(((((((((.((((((((....)))))))).----.....-...)))))))))...)))))..................... ( -22.80)
>DroWil_CAF1 79600 84 + 1
--------------------------CGCUGCCAUUGCAAAAUGUUGCUUAUAAAUUAUUAUGAGCCAUGGCCAUGCCACGCAUUUUG-------CAACAUUUAAUGGCACAAAAU-U
--------------------------.(.((((((((((((((((.((((((((....))))))))..((((...)))).))))))))-------)).......))))))).....-. ( -28.11)
>DroYak_CAF1 69023 92 + 1
A-------------------GCUA--CUAUGCCAUCGCAAAAUGUUGCUUAUGAAUUAUUAUGAGCC----CCAUG-CACGCAUUUUGCAUUUGGCAACAUUUUAUGGAACCGAAUUU
.-------------------....--...(((((..(((((((((.((((((((....)))))))).----.....-...)))))))))...)))))..................... ( -22.80)
>DroMoj_CAF1 74668 83 + 1
--------------------GCCGCACGCUGCCAUUGCAAAAUGUUGCUUAUGAAUUAUUAUGAGCC------ACG-CACGCAUUUUG-------CAACAUUAAAUGGCACUAAAU-U
--------------------(((((.....))..(((((((((((.((((((((....)))))))).------...-...))))))))-------)))........))).......-. ( -23.30)
>DroAna_CAF1 65196 113 + 1
AGUACCAGUAGAGGCAGGCUGCUCCGCUCUGCCAUGGCAAAAUGUUGCUUAUGAAUUAUUAUGAGCC----CCAUG-CACGCAUUUUGCAUUUGGCUACAUUUUAUGGCACCGAAAUU
.(((((((....(((((((......)).)))))...(((((((((.((((((((....)))))))).----.....-...)))))))))..)))).)))................... ( -32.50)
>consensus
A___________________GCUC__CUAUGCCAUCGCAAAAUGUUGCUUAUGAAUUAUUAUGAGCC____CCAUG_CACGCAUUUUGCAUUUGGCAACAUUUUAUGGAACCGAAUUU
.............................(((((..(((((((((.((((((((....))))))))..............)))))))))...)))))..................... (-15.90 = -17.26 +   1.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:59 2006