| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 6,915,281 – 6,915,384 |
| Length | 103 |
| Max. P | 0.678226 |
| Location | 6,915,281 – 6,915,384 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 81.85 |
| Mean single sequence MFE | -28.89 |
| Consensus MFE | -26.10 |
| Energy contribution | -26.43 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.37 |
| Structure conservation index | 0.90 |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.678226 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6915281 103 - 27905053 -------GGCGAUGUCAGUCUCAGGCUGCUGCGUUGUCCAAAAACUGCCCGCCAGAGACUGUUCGCCACUCUGUUUCCU--CACCCUGCCCUCUAACCUCUUC-CGCUCUCUU -------(((((...(((((((.(((.((...(((.......))).))..))).))))))).)))))............--......................-......... ( -27.90) >DroSec_CAF1 64050 102 - 1 UAUCCGGGGCGAUGUCAGUCUCAGGCUGCUGCGUUGUCCAAAAACUGCCCGCCAGAGACUGUUCGCCACUC-GUUCCCU--UAACCUGCCCUCUGACCUCUUC-CG------- ....((((((((...(((((((.(((.((...(((.......))).))..))).))))))).)))))....-(((....--.))).................)-))------- ( -29.30) >DroSim_CAF1 63402 103 - 1 UAUCCGGGGCGAUGUCAGUCUCAGGCUGCUGCGUUGUCCAAAAACUGCCCGCCAGAGACUGUUCGCCACUCUGUUCCCU--CAACCUGCCCUCUGACCUCUUC-CG------- ....((((((((...(((((((.(((.((...(((.......))).))..))).))))))).)))))....((......--))...................)-))------- ( -29.30) >DroEre_CAF1 65881 101 - 1 UAUCCGGGGCGAUGUCAGUCUCAGGCUGCUGCGUUGUCCAAAAACUGCCCGCCAGAGACUGUUCGCCACUCUGUUCGCU--UACCCUG-------ACCCCUUG-GAU--UUUC .(((((((((((...(((((((.(((.((...(((.......))).))..))).))))))).))))).....(((.(..--....).)-------))...)))-)))--.... ( -30.70) >DroYak_CAF1 65698 108 - 1 UAUCCGGGGCGAUGUCAGUCUCAGGCUGCUGCGUUGUCCAAAAACUGCCCGCCAGAGACUGUUCACCACUCUGUUUCCU--CAUCCUGCCCUCUGAACUCUUG-GGU--UCUA .....(((((((((.(((((((.(((.((...(((.......))).))..))).)))))))..................--))))..)))))..(((((....-)))--)).. ( -31.61) >DroAna_CAF1 61485 100 - 1 UAUCCGGGGCGAUGUCAGUCUCAGGCUGCUGCGUUGUCCAAAAACUGCCCGCCAGAGACUUUUCGCCACACCAUUUCCCCCUAACUUUUC------CCUUUUCGUU------- .....(((((((....((((((.(((.((...(((.......))).))..))).))))))..)))))...))..................------..........------- ( -24.50) >consensus UAUCCGGGGCGAUGUCAGUCUCAGGCUGCUGCGUUGUCCAAAAACUGCCCGCCAGAGACUGUUCGCCACUCUGUUCCCU__CAACCUGCCCUCUGACCUCUUC_CG_______ .......(((((...(((((((.(((.((...(((.......))).))..))).))))))).))))).............................................. (-26.10 = -26.43 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:58 2006