Locus 2545

Sequence ID 3R_DroMel_CAF1
Location 6,914,241 – 6,914,343
Length 102
Max. P 0.769600
window4154

overview

Window 4

Location 6,914,241 – 6,914,343
Length 102
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 81.83
Mean single sequence MFE -21.08
Consensus MFE -13.94
Energy contribution -14.97
Covariance contribution 1.03
Combinations/Pair 1.24
Mean z-score -2.14
Structure conservation index 0.66
SVM decision value 0.53
SVM RNA-class probability 0.769600
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6914241 102 - 27905053
GCUCCAGAUUUUCGAUAAUUAAAUACUUUAUACGAUUUCUCAAAUGAAGUUGUAUCAGUUCAUAUUGCCUUCGCUUGAAGACUUUCUUCGAUUUGGCAACGC
((......................(((..((((((((((......)))))))))).))).....(((((.....((((((.....))))))...))))).)) ( -21.20)
>DroSec_CAF1 63051 102 - 1
UCUCCAGAUUUUCAAUAAUUAAAUACUUAAUACGAUUUCUCAAAUGAAGUUGUAUCAAUUCAUAUUGCCUUCGCUCGAAGACUUUCUUCCACUUGGCAACGC
.............................((((((((((......)))))))))).........(((((.......((((.....)))).....)))))... ( -18.00)
>DroSim_CAF1 62402 102 - 1
UCUCCAGAUUUUCAAUAAUUAAAUACUUAAUACGAUUUCUCAAAUGAAGUUGUAUCAAUUCAUAUUGCCUUCGCUUGAAGACUUUCUUCGACUUGGCAACGC
.............................((((((((((......)))))))))).........(((((...(.((((((.....)))))))..)))))... ( -20.50)
>DroEre_CAF1 64823 102 - 1
GCUCCAGCUUUUCAAUAAUUAAAUGCUUGAUACGAUUUCUCAAAUGAAGUUGUAUCAAUUCAAUUUGCCUUUGCUUGAAGACUUUCUUUGACUUGGCGAUGC
((....))..................(((((((((((((......)))))))))))))......(((((...(.(..(((.....)))..))..)))))... ( -25.10)
>DroWil_CAF1 74662 102 - 1
CUUCUAGAUCCUUGAUGAUCAAUUCCUUCAUCCGAUUUUUCAAUUGAAGCAAUUUUAAUUCCUCUUGGUUUUCCUUAAAGAUUCGUUUGCAUUUUGCAAGGC
(((..((..((..((.((..((((.(((((...((....))...))))).)))).....)).))..)).....))..))).....(((((.....))))).. ( -13.60)
>DroYak_CAF1 64631 102 - 1
GCUCGAGAUAUUCGAUAAUUAAAAGCUUGAUGCGAUUUCUCAAAUGAAGUUGUAUCAAUUCAUUUUGCCUUUGCUUGAAGACCUUCUUCGAUUUGGCAAUGC
..(((((...))))).........(((((((((((((((......)))))))))))))......(((((.....((((((.....))))))...))))).)) ( -28.10)
>consensus
GCUCCAGAUUUUCAAUAAUUAAAUACUUAAUACGAUUUCUCAAAUGAAGUUGUAUCAAUUCAUAUUGCCUUCGCUUGAAGACUUUCUUCGACUUGGCAACGC
.............................((((((((((......)))))))))).........(((((.....((((((.....))))))...)))))... (-13.94 = -14.97 +   1.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:55 2006