Locus 2544

Sequence ID 3R_DroMel_CAF1
Location 6,912,029 – 6,912,127
Length 98
Max. P 0.768571
window4153

overview

Window 3

Location 6,912,029 – 6,912,127
Length 98
Sequences 5
Columns 99
Reading direction reverse
Mean pairwise identity 81.11
Mean single sequence MFE -16.11
Consensus MFE -13.58
Energy contribution -13.30
Covariance contribution -0.28
Combinations/Pair 1.21
Mean z-score -1.63
Structure conservation index 0.84
SVM decision value 0.52
SVM RNA-class probability 0.768571
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6912029 98 - 27905053
ACCGCUCCGUCAGGUUGUAAUA-UUUUUUUCCCCCAUUUCGCACAAAAAGCACAGCCAAACGAGCAGACAUUUUCGCUACUGCCCCCACCAAAGCCAUC
...((((.((..((((((....-(((((................)))))..))))))..))))))..........((....))................ ( -14.09)
>DroSec_CAF1 60854 98 - 1
ACCGCUCCGUAAGGCAGUAAUA-UUUUUUUCCCCCAUUUCGCACAAAAAGCACAGCCAAGCGAGCAGACAUUUUCGCUACUGCCCCCACCACAGCCAUC
...(((..((..(((((((...-.................((.......))........(((((........))))))))))))...))...))).... ( -18.80)
>DroSim_CAF1 60216 98 - 1
ACCGCUCCGUCAGGCUGUAAUA-UUUUUUUCCCCCAUUUCGCACAAAAAGCACAGCCAAGCGAGCAGACAUUUUCGCUACUGCCCCCACCACAGCCAUC
............((((((....-.................((.......)).(((...((((((........)))))).)))........))))))... ( -19.10)
>DroEre_CAF1 62119 81 - 1
ACCGCUCCGUCAGGCUGUUAUAAUUUUUUUCCCCCAUUUCGCACAAAAAGCACAGCCAAGCGAGUAGACAC------------------AACCACCCAA
.(..(((.((..((((((......................((.......))))))))..)))))..)....------------------.......... ( -13.34)
>DroYak_CAF1 62407 81 - 1
ACCGCUCCGUCAGGCUGUUAUAAUUUUUUUCCCCCAUUUCGCACAAAAAGCACAGCCAAGCGAGCAGACAC------------------AACCACCAGC
...((((.((..((((((......................((.......))))))))..))))))......------------------.......... ( -15.24)
>consensus
ACCGCUCCGUCAGGCUGUAAUA_UUUUUUUCCCCCAUUUCGCACAAAAAGCACAGCCAAGCGAGCAGACAUUUUCGCUACUGCCCCCACCACAGCCAUC
...((((.((..((((((......................((.......))))))))..)))))).................................. (-13.58 = -13.30 +  -0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:54 2006