Locus 2543

Sequence ID 3R_DroMel_CAF1
Location 6,907,437 – 6,907,533
Length 96
Max. P 0.988392
window4152

overview

Window 2

Location 6,907,437 – 6,907,533
Length 96
Sequences 6
Columns 96
Reading direction forward
Mean pairwise identity 75.45
Mean single sequence MFE -32.82
Consensus MFE -24.45
Energy contribution -24.53
Covariance contribution 0.08
Combinations/Pair 1.16
Mean z-score -2.36
Structure conservation index 0.74
SVM decision value 2.12
SVM RNA-class probability 0.988392
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6907437 96 + 27905053
UGUGUGUGCCUCGGGUUUUUGGGGUGGGUGGAAACAUCUUGCUCGGGGUCACACUCACACACCAAAAAUACAUAUUCUUGGGCAAUAGGUGGGAAG
((.(((((((((((((.........(((((....))))).)))))))).))))).))..((((.......((......)).......))))..... ( -32.84)
>DroSec_CAF1 56197 95 + 1
UGUGUGUGCCUCGGGUU-UUGGGGUGGGUGGAAACAUCUUGCUCGGGGUCACACUCACACACCAGAAAUACAUUUUCUUGGGAGUUAGGUGAAAAG
.(((((.(((((((((.-.......(((((....))))).))))))))))))))((((((.(((((((.....)))).)))..))...)))).... ( -35.10)
>DroSim_CAF1 56623 95 + 1
UGUGUGUGCCUCGGGUU-UUGGGGUGUGUGGAAACAUCUUGCUCGGGGUCACACUCACACACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
((.(((((((((((((.-..(((((((......))))))))))))))).))))).))....................................... ( -27.60)
>DroEre_CAF1 57304 95 + 1
UGUGUGUGCCUCGGGUU-UUGGGGUGGGUGGAAACAUCUUGCUCGGGGUCACACUCACACACCAGAAAUACAUUUCCUAGGGCGUUAGGUGAGUAC
...(((.(((((((((.-.......(((((....))))).))))))))))))((((((((.((.((((....))))....)).))...)))))).. ( -33.50)
>DroYak_CAF1 57470 96 + 1
UGUGUGUGCCCCGGGUUUUUGGGGUGGGUGGCAACAUCUUGCUCGGGGUCACACUCACACAGCAGAAAUAAAUUUUCUAGGGCGUUAGGUGAGUGG
...(((.(((((((((.........(((((....))))).))))))))))))((((((...(((((((.....)))))...)).....)))))).. ( -37.40)
>DroAna_CAF1 53931 94 + 1
AGUGUGUG-CUCGGAUU-UUGGGGUAGGUGGAAACAUCUUGCUCGGGGUCAUACCCACAUACAGGAGCCGAAUGUUGCAAAGAGGUUUGUGGUGAC
.(((((((-....((((-(((((..(((((....)))))..))))))))).....))))))).(..(((((((.((.....)).))))..)))..) ( -30.50)
>consensus
UGUGUGUGCCUCGGGUU_UUGGGGUGGGUGGAAACAUCUUGCUCGGGGUCACACUCACACACCAGAAAUACAUUUUCUAGGGCGUUAGGUGAGAAG
.(((((.(((((((((.........(((((....))))).)))))))))))))).......................................... (-24.45 = -24.53 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:53 2006