Locus 2541

Sequence ID 3R_DroMel_CAF1
Location 6,905,692 – 6,905,787
Length 95
Max. P 0.757432
window4149

overview

Window 9

Location 6,905,692 – 6,905,787
Length 95
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 79.73
Mean single sequence MFE -14.05
Consensus MFE -8.93
Energy contribution -8.40
Covariance contribution -0.52
Combinations/Pair 1.39
Mean z-score -1.74
Structure conservation index 0.64
SVM decision value 0.49
SVM RNA-class probability 0.757432
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6905692 95 - 27905053
ACCGUU-------GUUCCACUAAUUG--CUUCACUUUUUUAUUGCACUUUUCUA--AAGCAAUCCAAGAGUUUCGGAAUAUCUUAA--AAAUAUUUCUCUUAUUACAC
...(.(-------(((((.(.....)--....((((((..(((((.........--..)))))..))))))...)))))).)....--.................... ( -11.10)
>DroSec_CAF1 54273 95 - 1
ACCGUU-------GUCCCACUAAUUG--CUUCGCUUUUUUAUUGCACUUUUCUA--AAGCAAUCCAAGAGUUUCGGAAUAUCUUAA--AAAUAUUUCUCUUAUUUCAC
......-------.............--....((((((..(((((.........--..)))))..))))))...(((((((.....--..)))))))........... ( -10.20)
>DroSim_CAF1 54680 95 - 1
ACCGUU-------GUCCCACUAAUUG--CUUCGCUUUUUUAUUGCACUUUUCUA--AAGCAAUCCAAGAGUUUCGGAAUAUCUUAA--AAAUAUUUCUCUUAUUACAC
......-------.............--....((((((..(((((.........--..)))))..))))))...(((((((.....--..)))))))........... ( -10.20)
>DroEre_CAF1 55359 102 - 1
UCCGUUUGUUUUUUCCCCACUAAUUG--CUUUACCUUUUUAUUGCACUUUUCUA--AAGCAAUGCCAGAGUUUUGGAAUAUCUUUA--AAAUAUUCCUCUUAUUACAC
......................((((--(((((...................))--)))))))....(((....(((((((.....--..))))))).)))....... ( -12.61)
>DroYak_CAF1 55513 95 - 1
ACUGUU-------UACCCACUAAUUG--CUUUACUUUUUUAUUGCACUUUUCUA--GAGCAAUGCAAGAGUUUUGGAAUAUCUUAA--AAAUAUUCCUCUUAUUACAC
......-------.............--....((((((.((((((.((.....)--).)))))).))))))...(((((((.....--..)))))))........... ( -16.20)
>DroAna_CAF1 52211 98 - 1
ACACUU-------C--AUUUUAAUUGAACUUCAGUGCUUUAU-GUUCUUCUCUAUAGAGGAGAGCAGCAUGGUUGGAAUAUCUAAAUGGAAUAUUCCCUUUAUUACAC
......-------.--..........((((...(((((....-(((((((((....))))))))))))))))))(((((((((....)).)))))))........... ( -24.00)
>consensus
ACCGUU_______GUCCCACUAAUUG__CUUCACUUUUUUAUUGCACUUUUCUA__AAGCAAUCCAAGAGUUUCGGAAUAUCUUAA__AAAUAUUCCUCUUAUUACAC
................................((((((..(((((.............)))))..))))))...(((((((.........)))))))........... ( -8.93 =  -8.40 +  -0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:50 2006