Locus 2540

Sequence ID 3R_DroMel_CAF1
Location 6,903,165 – 6,903,264
Length 99
Max. P 0.595505
window4148

overview

Window 8

Location 6,903,165 – 6,903,264
Length 99
Sequences 5
Columns 99
Reading direction reverse
Mean pairwise identity 94.55
Mean single sequence MFE -20.91
Consensus MFE -18.15
Energy contribution -18.03
Covariance contribution -0.12
Combinations/Pair 1.09
Mean z-score -1.25
Structure conservation index 0.87
SVM decision value 0.12
SVM RNA-class probability 0.595505
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6903165 99 - 27905053
AAUAUCGAGAACAGGCAUUUGCAUACUUUCCUAUGUUCGGCGUCUCUUUCUUCUCGGUUAGCUGCCUCUCUUUCGCACACACAUGGCAAAAGCCAUAAA
...((((((((.((((....(((((......))))).....)))).....))))))))..(.(((.........))))....(((((....)))))... ( -19.10)
>DroSec_CAF1 51678 99 - 1
AAUAUCGAGAACAGGCAUUUGCAUACUUUCCUAUGUUCGGCGUCUCUUUCUUCUCGGUUAGCUGCCUCUCUUUCGCACACACAUGGCAAAAGCCAUAAA
...((((((((.((((....(((((......))))).....)))).....))))))))..(.(((.........))))....(((((....)))))... ( -19.10)
>DroSim_CAF1 52080 99 - 1
AAUAUCGAGAACAGGCAUUUGCAUACUUUCCUAUGUUCGGCGUCUCUUUCUUCUCGGUUAGCUGCCUCUCUUUCGCACACACAUGGCCAAAGCCAUAAA
...((((((((.((((....(((((......))))).....)))).....))))))))..(.(((.........))))....(((((....)))))... ( -18.60)
>DroEre_CAF1 52789 99 - 1
AAUAUCGAGAAGAGGCAUUUGCAUACUCUCCUAUGCUCGGCGUCUCUUUCUGCUCCUUUAGCUGCCUCUCUCUCGCACACACAUGGCCAAAGCCAUAAA
.....((((((((((((...(((((......)))))..((.((........)).))......))))))).))))).......(((((....)))))... ( -29.30)
>DroYak_CAF1 52898 99 - 1
AAUAUCGAGAACACGCAUUUGCAUACUCUCCUAUGUGCGGCGUCUCUUUCUUCUCCGUUAGCUGCCUCUCUUUCGCACACACAUGGCCGCAGCCAUAAA
......((((...(((....(((((......))))))))...))))..........(((.((.(((..................))).)))))...... ( -18.47)
>consensus
AAUAUCGAGAACAGGCAUUUGCAUACUUUCCUAUGUUCGGCGUCUCUUUCUUCUCGGUUAGCUGCCUCUCUUUCGCACACACAUGGCCAAAGCCAUAAA
.....(((((..((((....(((((......)))))..(((...................)))))))...))))).......(((((....)))))... (-18.15 = -18.03 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:49 2006