| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 992,020 – 992,128 |
| Length | 108 |
| Max. P | 0.971155 |
| Location | 992,020 – 992,128 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 76.42 |
| Mean single sequence MFE | -38.75 |
| Consensus MFE | -23.79 |
| Energy contribution | -24.10 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.35 |
| Mean z-score | -2.22 |
| Structure conservation index | 0.61 |
| SVM decision value | 1.67 |
| SVM RNA-class probability | 0.971155 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 992020 108 + 27905053 GAGAGGGGCAACAGCAGCAGC---CUCAGCUGGACGCUGCAAAUCAAGUAUGUGAAUCUGGAGGACGCCGGCUGGUACGAGUGCCAGCUGGCAACGGAGCCCAAAAUGAGC .....((((....(((((..(---(......))..)))))................((((......(((((((((((....)))))))))))..))))))))......... ( -45.10) >DroVir_CAF1 43640 100 + 1 A--AACGGCAG------CAGC---CUCGGCUGGACGCUGCUCAUCAAAUAUGUCAGUCUGCAGGAUACCGGCUGGUAUGAAUGCCAGCUGGCCACAGAGCCAAAGAUGAGC .--...(((..------((((---....))))...)))(((((((......((...((((..((...((((((((((....)))))))))))).))))))....))))))) ( -37.40) >DroPse_CAF1 49909 108 + 1 GAUAGGGGCAACGCGAGCAGC---CUGAGCUGGACGCUGCAAAUCAAAUACGUGCGGCUCGAGGAUGCCGGCUGGUACGAGUGCCAGCUGGCCACCGAGCCCAAAAUGAGC (((....(((..(((..((((---....))))..))))))..))).......((.((((((.(...(((((((((((....)))))))))))..)))))))))........ ( -47.00) >DroWil_CAF1 45531 111 + 1 GAAAGUGGAAAUGGUAGCAGCGGAUUAGGCUGGACGCUGCAAAUCAAAUAUGUGAAACUCGAGGAUGCUGGCUGGUAUGAAUGCCAGUUGGCAACCGAACCAAAAAUGAGC ...........((((.((((((..(......)..))))))......................((.(((..(((((((....)))))))..))).))..))))......... ( -37.20) >DroMoj_CAF1 35355 106 + 1 C--AGCGGCAGCAGCAACAGC---CUUGGCUGGACGUUGCUCAUCAAAUAUGUCAAUCUGCAGGAUAUGGGCUGGUACGAAUGUCAGCUAGCCACAGAGCCCAAAAUGAGU .--.(.(((((((((..((((---....))))...))))))..((...((((((.........))))))(((((((..........)))))))...))))))......... ( -32.60) >DroAna_CAF1 39180 108 + 1 GAGCGAGGCAAUGGCAGUAGC---CUGAGCUGGACACUGCAAAUCAAGUACGUGAAGCUGGACGACGCCGGAUGGUACGAGUGCCAAUUGGCAACUGAGCCCAAAAUGAGC ....(.(((....(((((..(---(......))..)))))...(((.((.(((........)))))(((((.(((((....))))).)))))...)))))))......... ( -33.20) >consensus GA_AGCGGCAACGGCAGCAGC___CUCAGCUGGACGCUGCAAAUCAAAUAUGUGAAUCUGGAGGAUGCCGGCUGGUACGAAUGCCAGCUGGCAACAGAGCCCAAAAUGAGC ......(((.......(((((...(......)...)))))..........................(((((((((((....)))))))))))......))).......... (-23.79 = -24.10 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:44 2006