| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 6,901,016 – 6,901,108 |
| Length | 92 |
| Max. P | 0.691669 |
| Location | 6,901,016 – 6,901,108 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 77.68 |
| Mean single sequence MFE | -26.94 |
| Consensus MFE | -17.93 |
| Energy contribution | -19.07 |
| Covariance contribution | 1.14 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.32 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.691669 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6901016 92 + 27905053 AAUGAGAAUAGGACUGAGGCCAAG------A----CCGAGAGGAAUCCCUUUCGCUGGCAGAUGUUGCC-----------ACACAAAUGUCUCAAGUGGCAAUCAAGGCACUU ..............((((((....------.----.(((((((....))))))).((((((...)))))-----------).......))))))((((.(......).)))). ( -25.80) >DroPse_CAF1 70136 96 + 1 -----------GCCAGAGGCUGAG------AGACUGCGAGAGGAAUCCCUUUCGCUGGCAGCUGUUGCCGCGCCGCAGCAGCACAAAUGUCUCAAGUGGCAAUCAAGGCGCUU -----------(((...)))...(------((((.((((((((....)))))))).....((((((((......))))))))......)))))(((((.(......).))))) ( -40.90) >DroEre_CAF1 50645 92 + 1 AAUGAGAAUAGGACUGAGGCCGAG------A----CCGAGAGGAAUCCCUUUCGCUGGCAGAUGUUGCC-----------ACACAAAUGUCUCAAGUGGCAAUCAAGGCACUU ..........((.(....)))(((------(----((((((((....))))))).((((((...)))))-----------).......)))))(((((.(......).))))) ( -27.70) >DroWil_CAF1 59421 77 + 1 AAUGAAUAU---------------------A----ACAAGAAGAAUCCCUUUCGCCGGCAGCUGUCGCC-----------ACACAAAUGUCUCAAGUGGCAAUCAAGGCGCUU .........---------------------.----....((((.....))))(((((((....)))(((-----------((.............)))))......))))... ( -16.92) >DroYak_CAF1 50732 98 + 1 AAUGGGAAUAGGACUGAGGCCGAGACCAAGA----CCGAGAGGAAUCCCUUUCGCUGGCAGAUGUUGCC-----------ACACAAAUGUCUCAAGUGGCAAUCAAGGCACUU ..........((.(....)))(((((.....----.(((((((....))))))).((((((...)))))-----------).......)))))(((((.(......).))))) ( -27.70) >DroAna_CAF1 47694 92 + 1 AAUAAGAAUGGGACUGAGACUGAA------A----CCAAGAGGAAUCCCUUUCGCUGGCAGCUGUUGCC-----------ACACAAAUGUCUCAAGUGGCAAUCAAGGCGCUU .....(((.(((((.......)..------.----((....))..)))).)))...(((.(((((((((-----------((.............))))))))...)))))). ( -22.62) >consensus AAUGAGAAUAGGACUGAGGCCGAG______A____CCGAGAGGAAUCCCUUUCGCUGGCAGAUGUUGCC___________ACACAAAUGUCUCAAGUGGCAAUCAAGGCACUU ...............(((((................(((((((....)))))))..(((((...)))))...................)))))(((((.(......).))))) (-17.93 = -19.07 + 1.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:48 2006