Locus 2537

Sequence ID 3R_DroMel_CAF1
Location 6,897,229 – 6,897,326
Length 97
Max. P 0.533005
window4145

overview

Window 5

Location 6,897,229 – 6,897,326
Length 97
Sequences 6
Columns 110
Reading direction forward
Mean pairwise identity 80.27
Mean single sequence MFE -27.81
Consensus MFE -15.80
Energy contribution -16.55
Covariance contribution 0.75
Combinations/Pair 1.10
Mean z-score -1.77
Structure conservation index 0.57
SVM decision value -0.00
SVM RNA-class probability 0.533005
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6897229 97 + 27905053
GG-----GAUUCUGGU--CCUGGUGCCCGUUUUAGACUCCUUUGGC----AGACAACU-U-UGCAUUGAGCCAUUUAUGCUAUCAUGUAUGAAAUGGGCGCCCACAUAAA
((-----(((....))--)))(((((((((((((.((.....((((----(.....((-(-......))).......)))))....)).)))))))))))))........ ( -31.70)
>DroSec_CAF1 45859 102 + 1
GGGCCCGGAUUCUGGU--CAUGGUGCCCGUUUUAGACUCCUUUGGC----AGACAACU-U-UGCAUUGAGCCAUUUAUGCUAUCAUGUAUGAAAUGGGCGCCCACAUAAA
((((((((((....))--).))).((((((((((.((.....((((----(.....((-(-......))).......)))))....)).))))))))))))))....... ( -31.90)
>DroEre_CAF1 46819 102 + 1
GGGUCCGGAUUCUGGU--CCUGGUGCCCAUUUUAGACUCCUUUGGC----AGACAACU-U-UGCAUUGAGCCAUUUAUGCUAUCAUGUAUGAAAUGGGCGCCCACAUAAA
(((.((((...)))).--)))(((((((((((((.((.....((((----(.....((-(-......))).......)))))....)).)))))))))))))........ ( -35.10)
>DroWil_CAF1 45433 90 + 1
---------------G--CCUUUUGCCU--UUUUCUUUCUUUCAGCCACAAGACAACU-UCUGCAUUGAGCCAUUUAUGCUAUCAUGUAUGAAAUGGGCGCCCACAUGAC
---------------.--......((((--.((((..((((........)))).....-..(((((..(((.......)))...))))).)))).))))........... ( -14.40)
>DroYak_CAF1 46901 102 + 1
GGGUCCGGAUUCUGGU--CCUGGUGCCCGCUUUAGACUCCUUUGGC----AGACAACU-U-UGCAUUGAGCCAUUUAUGCUAUCAUGUAUGAAAUGGGCGCCCACAUAAA
(((.((((...)))).--)))((((((((.....(.(((.....((----(((....)-)-)))...))).).(((((((......))))))).))))))))........ ( -33.30)
>DroAna_CAF1 44071 87 + 1
-------GCUUCCGGUGCCUUGGUGC-----------UUCUUUUCC----AGACAACUUU-UGCAUUGAGCCAUUUAUGCUAUCAUGUAUGAAAUGGACGCCCACAUAAA
-------......((.((((..((((-----------.........----..........-.))))..))((((((((((......))))).)))))..))))....... ( -20.45)
>consensus
GG_____GAUUCUGGU__CCUGGUGCCCGUUUUAGACUCCUUUGGC____AGACAACU_U_UGCAUUGAGCCAUUUAUGCUAUCAUGUAUGAAAUGGGCGCCCACAUAAA
.....................(((((((...........(((..((....((....))....))...)))...(((((((......)))))))..)))))))........ (-15.80 = -16.55 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:46 2006