Locus 2536

Sequence ID 3R_DroMel_CAF1
Location 6,890,653 – 6,890,753
Length 100
Max. P 0.511839
window4144

overview

Window 4

Location 6,890,653 – 6,890,753
Length 100
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 82.70
Mean single sequence MFE -33.30
Consensus MFE -18.88
Energy contribution -20.32
Covariance contribution 1.45
Combinations/Pair 1.24
Mean z-score -2.30
Structure conservation index 0.57
SVM decision value -0.04
SVM RNA-class probability 0.511839
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6890653 100 - 27905053
ACGGCCAAUGCGAUUCUCGAUGAUGAAGUUCAA---AAUCGGGCUGAUUAAGCUGGUGCGUGUACUUCAUCGCCUUCAAAGGGC-AAAUCGCAGCAGGUGGCGA
...((((.(((((((......((((((((.((.---...(.((((.....)))).)....)).))))))))((((.....))))-.))))))).....)))).. ( -39.80)
>DroSec_CAF1 44910 100 - 1
ACGGCCAAUGCGAUUCUCGAUGAUGAAGUUCAA---AAUCGGGCUGAUUAAGCUGCUGCGUGUACUUUAUCGCCUUCAAAGGGC-GAAUCGCAGCAGGUGGCGA
...((((.((((((((.....((((((((.((.---.....((((.....))))......)).))))))))((((.....))))-)))))))).....)))).. ( -38.80)
>DroSim_CAF1 45220 100 - 1
ACGGCCAAUGCGAUUCUCGAUGAUGAAGUUCAA---AAUCGGGCUGAUUAAGCUGCUGCGUGUACUUUAUCGCCUUCAAAGGGC-GAAUCGCAGCAGGUGGCGA
...((((.((((((((.....((((((((.((.---.....((((.....))))......)).))))))))((((.....))))-)))))))).....)))).. ( -38.80)
>DroEre_CAF1 45873 89 - 1
ACAGCCAAUGCGAAUCUCGAUGAUGAAGUUCAA---AAUAAGGCUGAUUAAGCUGCUGCGU-----------CCUUCAAAGGGC-AAAUCGCAGCAGGUGGCGA
.(((((....((.....)).(((......))).---.....)))))......(((((((((-----------(((....)))))-.....)))))))....... ( -27.60)
>DroYak_CAF1 45954 100 - 1
ACAGCCAAUGUGAAUCUCGAUGAUGAAGUUCAA---AAUCGGGCUGAUUAAGCUGCUGCGUGUACUUCAUUGCCUUCAAAGGGC-AAGUCGCAGCAGGUGGCGA
.(((((....((((..((......))..)))).---.....)))))......((((((((.........((((((.....))))-))..))))))))....... ( -35.20)
>DroAna_CAF1 43111 101 - 1
ACAACCAAUGGUGUCCUUGAUGAUAAAGUUGAAAUAAAUAUUACUGAUGAAGGUGGCGCGUGUGUUCCAUAUCCUUCUACAGGCUAUAUCGCAGCAGGUG---A
...(((.....((((......))))..((((..(((.......(((..((((((((.((....)).)))...)))))..)))....)))..)))).))).---. ( -19.60)
>consensus
ACAGCCAAUGCGAUUCUCGAUGAUGAAGUUCAA___AAUCGGGCUGAUUAAGCUGCUGCGUGUACUUCAUCGCCUUCAAAGGGC_AAAUCGCAGCAGGUGGCGA
.(((((....(((((.....(((......)))....))))))))))......((((((((...........((((.....)))).....))))))))....... (-18.88 = -20.32 +   1.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:45 2006