Locus 2534

Sequence ID 3R_DroMel_CAF1
Location 6,887,790 – 6,887,884
Length 94
Max. P 0.539847
window4141

overview

Window 1

Location 6,887,790 – 6,887,884
Length 94
Sequences 6
Columns 95
Reading direction reverse
Mean pairwise identity 77.58
Mean single sequence MFE -10.42
Consensus MFE -8.32
Energy contribution -8.27
Covariance contribution -0.06
Combinations/Pair 1.17
Mean z-score -0.79
Structure conservation index 0.80
SVM decision value 0.01
SVM RNA-class probability 0.539847
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6887790 94 - 27905053
AGCGAUUUUUUUCACUCUGGCUUUAUUUAAAUU-UCUCCGCCUGUUCUGUGACCGCAGGCAUUCCGCAUUCCCCGAUCCCCACAUUCCACACCCA
.(((..............((....((....)).-...))((((((.........))))))....)))............................ ( -12.10)
>DroSec_CAF1 41988 94 - 1
AGCGAUUUUUUUCACUCUGGCUUUAUUUAAAUU-UCUCCGCCUGUUCUGUGACCGCAGGCAUUCCACAUCCCCCGAUCUCCACAUUCCACAUCCA
((.((......)).)).(((.............-.....((((((.........)))))).......(((....)))..)))............. (  -9.40)
>DroSim_CAF1 42288 94 - 1
AGCGAUUUUUUUCACUCUGGCUUUAUUUAAAUU-UCUCCGCCUGUUCUGUGACCGCAGGCAUUCCACAUCCCCCGAUCCCCACAUUCCACAUCCA
((.((......)).)).(((.............-.....((((((.........)))))).......(((....)))..)))............. (  -9.60)
>DroEre_CAF1 42856 74 - 1
AGCGAUUUUUUUCACUCCGGCUUUAUUUAAAUU-UCUCUGCCUGUUCCGUGACCACAGGCAUUCCACAUC--------------------GCCCA
.(((((.....((.....)).............-....(((((((.........)))))))......)))--------------------))... ( -12.30)
>DroYak_CAF1 42871 86 - 1
AGCGAUUUUUUUCACUCUGGCUUUAUUUAAAUU-UCUCUGCCUGUUCUGUGACCACAGGCAUUCCGCAUUCC--------CACCUCCCCCAUCCA
.((((......))....................-....(((((((.........)))))))....)).....--------............... ( -11.90)
>DroPer_CAF1 59637 84 - 1
AGC--UUUUUUCCACUUU-GCUUUAUUUAAAUUUUCUUUGCCUCUGCAUUUACCGCAGGCAUUU-------UCUGAUCCGCACACAC-CCAUCGA
(((--.............-)))................(((((..((.......)))))))...-------................-....... (  -7.22)
>consensus
AGCGAUUUUUUUCACUCUGGCUUUAUUUAAAUU_UCUCCGCCUGUUCUGUGACCGCAGGCAUUCCACAUCCCCCGAUCCCCACAUUCCACAUCCA
.......................................((((((.........))))))................................... ( -8.32 =  -8.27 +  -0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:42 2006