Locus 2533

Sequence ID 3R_DroMel_CAF1
Location 6,886,672 – 6,886,780
Length 108
Max. P 0.888592
window4140

overview

Window 0

Location 6,886,672 – 6,886,780
Length 108
Sequences 5
Columns 109
Reading direction reverse
Mean pairwise identity 97.97
Mean single sequence MFE -18.90
Consensus MFE -15.40
Energy contribution -15.16
Covariance contribution -0.24
Combinations/Pair 1.05
Mean z-score -2.29
Structure conservation index 0.81
SVM decision value 0.95
SVM RNA-class probability 0.888592
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6886672 108 - 27905053
CCAGAAUUGCUUCAAUUAAAUUGAAAGCUUUUUAAUCGUUUUACUUUUGCUUUUACUUCUACUUCAGGAGCGGUUUUCCGUCUUUGAAU-CGCUCCCUACAAAUUUUCA
...(((..((((((((...)))).))))..))).................................((((((((((.........))))-))))))............. ( -19.60)
>DroSec_CAF1 40875 108 - 1
CCAGAAUUGCUUCAAUUAAAUUGAAAGCUUUUUAAUCGUUUUACUUUUGCUUUUACUUCUACUUCAGGAGCGGUUUUCCGUCUUUGAAU-CGCUCCCUGCAAAUUUUCA
...(((((((...........(((((((....(((.....))).....)))))))...........((((((((((.........))))-))))))..))))...))). ( -22.70)
>DroSim_CAF1 41171 108 - 1
CCAGAAUUGCUUCAAUUAAAUUGAAAGCUUUUUAAUCGUUUUACUUUUGCUUUUACUUCUACUUCAGGAGCGGUUUUCCGUCUUUGAAU-CGCUCCCUACAAAUUUUCA
...(((..((((((((...)))).))))..))).................................((((((((((.........))))-))))))............. ( -19.60)
>DroEre_CAF1 41768 107 - 1
CCAGAAUUGCUUCAAUUAAAUUGAAAGCUUUUUAAUCGUUUUACUUUUCCUUUUACUUCUACUUCAAGAGCGGUU-UCCGUCUUUGAAU-CGCUCCCUACAAAUUUUCA
...(((..((((((((...)))).))))..)))..................................((((((((-(........))))-))))).............. ( -16.30)
>DroYak_CAF1 41705 109 - 1
CCAGAAUUGCUUCAAUUAAAUUGAAAGCUUUUUAAUCGUUUUACUUUUGCUUUUACUUCUACUUCAAGAGCGGUUUUCCGUCUUUGAAUCCGCUCCCUACAAAUUUUCA
...(((..((((((((...)))).))))..)))..................................((((((..(((.......))).)))))).............. ( -16.30)
>consensus
CCAGAAUUGCUUCAAUUAAAUUGAAAGCUUUUUAAUCGUUUUACUUUUGCUUUUACUUCUACUUCAGGAGCGGUUUUCCGUCUUUGAAU_CGCUCCCUACAAAUUUUCA
...(((..((((((((...)))).))))..))).............................((((((..(((....)))..))))))..................... (-15.40 = -15.16 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:41 2006