Locus 2532

Sequence ID 3R_DroMel_CAF1
Location 6,886,423 – 6,886,516
Length 93
Max. P 0.950436
window4139

overview

Window 9

Location 6,886,423 – 6,886,516
Length 93
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 94.50
Mean single sequence MFE -21.70
Consensus MFE -21.00
Energy contribution -20.95
Covariance contribution -0.05
Combinations/Pair 1.11
Mean z-score -1.18
Structure conservation index 0.97
SVM decision value 1.40
SVM RNA-class probability 0.950436
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6886423 93 - 27905053
-----UUUUUAUUUUAGGUGACUUGCACACGAUUGCAGGUUAUUAAUUAGCAUUGCAAGUUUAAUUGGCUCCGGCCAAGCGACACUUUCCAUUUGAGA
-----......(((((((((............((((((((((.....)))).))))))(((...(((((....)))))..)))......))))))))) ( -22.00)
>DroSec_CAF1 40625 93 - 1
-----UUUUUAUUUUAGGUGACUUGCACACGAUUGCAGGUUAUUAAUUAGCAUUGCAAGUUUAAUUGGCUCCGGCCAAGCGACACUUUCUAUUUGAGA
-----.(((((..(.(((((..((((......((((((((((.....)))).))))))......(((((....))))))))))))))...)..))))) ( -22.10)
>DroSim_CAF1 40921 93 - 1
-----UUUUUAUUUUAGGUGACUUGCACACGAUUGCAGGUUAUUAAUUAGCAUUGCAAGUUUAAUUGGCUCCGGCCAAGCGACACUUUCCAUUUGAGA
-----......(((((((((............((((((((((.....)))).))))))(((...(((((....)))))..)))......))))))))) ( -22.00)
>DroEre_CAF1 41519 92 - 1
-----UU-UUAUUUUAGGUGACUUGCACACGAUUGCAGGUUAUUAAUUAGCAUUGCAAGUUUAAUUGGCUCCGGCCAAGCGACACUUUCCAUUUGAGA
-----..-...(((((((((............((((((((((.....)))).))))))(((...(((((....)))))..)))......))))))))) ( -22.00)
>DroYak_CAF1 41448 92 - 1
-----UU-UUAUUUUAGGCGACUUGCACACGAUUGCAGGUUAUUAAUUAGCAUUGCAAGUUUAAUUGGCUCCGGCCAAGCGACACUUUCCAUUUGAGA
-----..-........((.((.((((......((((((((((.....)))).))))))......(((((....)))))))))...)).))........ ( -19.10)
>DroAna_CAF1 38823 98 - 1
AUGUAUUUCUUCUUUUUGUGACUUGCACACGAUUGCAAGUUAUUAAUUAGCAUUGCAAGUUUAAUUGGCUCCGGCCAAGCGACACUUUCCAUUUGAGG
.((((...((..((...((((((((((......)))))))))).))..))...)))).(((...(((((....)))))..))).(((.......))). ( -23.00)
>consensus
_____UUUUUAUUUUAGGUGACUUGCACACGAUUGCAGGUUAUUAAUUAGCAUUGCAAGUUUAAUUGGCUCCGGCCAAGCGACACUUUCCAUUUGAGA
...........(((((((((............((((((((((.....)))).))))))(((...(((((....)))))..)))......))))))))) (-21.00 = -20.95 +  -0.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:40 2006