Locus 2531

Sequence ID 3R_DroMel_CAF1
Location 6,883,843 – 6,883,936
Length 93
Max. P 0.875083
window4138

overview

Window 8

Location 6,883,843 – 6,883,936
Length 93
Sequences 6
Columns 93
Reading direction forward
Mean pairwise identity 83.67
Mean single sequence MFE -24.93
Consensus MFE -19.91
Energy contribution -19.97
Covariance contribution 0.06
Combinations/Pair 1.10
Mean z-score -2.48
Structure conservation index 0.80
SVM decision value 0.89
SVM RNA-class probability 0.875083
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6883843 93 + 27905053
GUCGGAUGAUGAUGCCAGGGAGCGGACGACAAAGCGUGUGACAGCAUUUUGCAUACGCUGAUGAAUCCAUCAUCUUUACUCAACGUCACAUCA
....((((.(((((.....(((..((.((...((((((((.(((....)))))))))))((((....)))).))))..)))..))))))))). ( -28.70)
>DroVir_CAF1 41852 77 + 1
--CGACUGA--------------CGGCGACAAAGCGUGUGACAGCAUUUUGCAUACGCUGAUGAAUCCAUCAUCUUUACUCAACGUCACAUCA
--.((.(((--------------((..((...((((((((.(((....)))))))))))(((((.....))))).....))..)))))..)). ( -23.50)
>DroGri_CAF1 40384 77 + 1
--CGUUUGA--------------CGACGACAAAGCGUGUGACAGCAUUUUGCAUACGCUGAUGAAUCCAUCAUCUUUACUCAACGUCACAUCA
--....(((--------------((..((...((((((((.(((....)))))))))))(((((.....))))).....))..)))))..... ( -22.50)
>DroWil_CAF1 37571 93 + 1
GGAGGAUGAUGACGACUGACGACUGAGGACAAAGCGUGUGACAGCAUUUUGCAUACGCUGAUGAAUCCAUCAUCUUUACUCAACGUCACAUCA
....((((.(((((..(((....((((((...((((((((.(((....)))))))))))((((....)))).)))))).))).))))))))). ( -29.90)
>DroMoj_CAF1 42922 77 + 1
--CGACUGA--------------CGACGACAAAGCGUGUGACAGCAUUUUGCAUACGCUGAUGAAUCCAUCAUCUUUACUCAAUGUCACAUCA
--.((.(((--------------((.......((((((((.(((....)))))))))))(((((.....))))).........)))))..)). ( -20.70)
>DroAna_CAF1 36473 93 + 1
GUCGGAUGAUGAUGCCAAGGAGCGGACGACAAAGCGUGGGACAGCAUUUUGCAUACGCUGAUGAAUCCAUCAUCUUUACUCAACGUCACAUCA
....((((.(((((.....(((..((.((...((((((.....((.....)).))))))((((....)))).))))..)))..))))))))). ( -24.30)
>consensus
__CGGAUGA______________CGACGACAAAGCGUGUGACAGCAUUUUGCAUACGCUGAUGAAUCCAUCAUCUUUACUCAACGUCACAUCA
........................((((....((((((((.(((....)))))))))))(((((.....))))).........))))...... (-19.91 = -19.97 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:39 2006