Locus 253

Sequence ID 3R_DroMel_CAF1
Location 986,697 – 986,790
Length 93
Max. P 0.844153
window442

overview

Window 2

Location 986,697 – 986,790
Length 93
Sequences 5
Columns 117
Reading direction forward
Mean pairwise identity 81.74
Mean single sequence MFE -17.96
Consensus MFE -8.02
Energy contribution -7.46
Covariance contribution -0.56
Combinations/Pair 1.16
Mean z-score -2.64
Structure conservation index 0.45
SVM decision value 0.76
SVM RNA-class probability 0.844153
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 986697 93 + 27905053
-----------------------AAAGGAAUUUCGCAAUUUAAUUG-UGAAUUCCUGAGGAAAGCACUUAAAACGCCCCUCCUCCCUUCAGAUAACGCAUUUCUUUACUCCCACAAU
-----------------------..(((((((.((((((...))))-)))))))))(((((..((.........))...)))))................................. ( -18.10)
>DroSec_CAF1 32445 116 + 1
GUGUAGCGCCUUCAGCUGCAUCAAAAGGAAUUUCGCAAUUUAAUUG-UGAAUUCCUGAGGAAAGCACUUAAAACGCCCCUCCUCUCUUCAGAUAACACAUUUCUUUACUCCCACAAU
(((((((.......)))))))....(((((((.((((((...))))-)))))))))(((((..((.........))...)))))................................. ( -26.90)
>DroSim_CAF1 33602 93 + 1
-----------------------AAAGGAAUUUCGCAAUUUAAUUG-UGAAUUCCUAAGGAAAGCACUUAAAACGCCCCUCCUCUCUUCAGAUAACACAUUUCUUUACUCCCACAAU
-----------------------..(((((((.((((((...))))-))))))))).((((..((.........))...)))).................................. ( -14.80)
>DroEre_CAF1 34320 91 + 1
-----------------------AAUGGAAUUUUGCAAUUUAAUUG-GGAAUUUCUGAGGAAAGCACUUAAAAC--CCAUCCUCUCUACUUAUAACACAUUUCUUUACUCCCACAAU
-----------------------...((((.(((.((((...))))-.))).))))(((((.............--...)))))................................. ( -10.39)
>DroYak_CAF1 36027 92 + 1
-----------------------AAUGGAAUUUUCCAAUUUAAUUGUGGAAUUUUUGAGGAAAGCACCUAUAAC--CCCUGCUCUCUUCAAAUAACAAAUUUCUUUACUCCCACAAU
-----------------------..((((....)))).....(((((((....((((((((.((((........--...)))).))))))))....(((....)))....))))))) ( -19.60)
>consensus
_______________________AAAGGAAUUUCGCAAUUUAAUUG_UGAAUUCCUGAGGAAAGCACUUAAAACGCCCCUCCUCUCUUCAGAUAACACAUUUCUUUACUCCCACAAU
..........................(((((((..((((...))))..)))))))((((((((....................................)))))))).......... ( -8.02 =  -7.46 +  -0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:43 2006