Locus 2529

Sequence ID 3R_DroMel_CAF1
Location 6,879,871 – 6,879,961
Length 90
Max. P 0.883417
window4135

overview

Window 5

Location 6,879,871 – 6,879,961
Length 90
Sequences 6
Columns 94
Reading direction forward
Mean pairwise identity 94.67
Mean single sequence MFE -29.73
Consensus MFE -26.89
Energy contribution -27.12
Covariance contribution 0.22
Combinations/Pair 1.09
Mean z-score -1.44
Structure conservation index 0.90
SVM decision value 0.93
SVM RNA-class probability 0.883417
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6879871 90 + 27905053
----GUGAUGGUGGUGCUGCUGCAAAUAUGCGGCCAAGUCGCUGCCUGGAACAAGCCUUAAGCAUCUGGGGCAUGCUACAAACGAGUGGAAAGA
----((...((..(((((((((((....))))))..)).)))..))....))..((((((......))))))...((((......))))..... ( -29.40)
>DroSec_CAF1 34133 90 + 1
----GUGAUGGUGGUGCUGCUGCAAAUAUGCGGCCAAGUCGCUGCCUGGAACAAGCCUUAAGCAUCUGGGGCAUGCUACAAACGAGUGGAAAGA
----((...((..(((((((((((....))))))..)).)))..))....))..((((((......))))))...((((......))))..... ( -29.40)
>DroSim_CAF1 34496 90 + 1
----GUGAUGGUGGUGCUGCUGCAAAUAUGCGGCCAAGUCGCUGCCUGGAACAAGCCUCAAGCAUCUGGGGCAUGCUACAAACGAGUGGAAAGA
----((...((..(((((((((((....))))))..)).)))..))....))..((((((......))))))...((((......))))..... ( -31.50)
>DroEre_CAF1 35155 90 + 1
----GAGAUGGUGGUGCUGCUGCAAAUAUGCGGCCAAGUCGCUGCCUGGAACAAGCCUUAAGCAUCUGGGGCAUGCUACAAACGAGUGGAAAGA
----.....((..(((((((((((....))))))..)).)))..))........((((((......))))))...((((......))))..... ( -28.30)
>DroYak_CAF1 35084 87 + 1
----G---UGGUGGUGCUGCUGCAAAUAUGCGGCCAAGUCGCUGCCUGGAACAAGCCUUAAGCAUCUGGGGCAUGCUACAAACGAGUGGAAAGA
----.---.((..(((((((((((....))))))..)).)))..))........((((((......))))))...((((......))))..... ( -28.30)
>DroAna_CAF1 32851 94 + 1
CGGUGUGGUGGUGGAGCAGCUGCAAAUAUGCGGCCAAGUCGCUGCCUGGCACAAGCCUUAAGCAUCUGGGGCAUGCUACAAACGAGAAGAAAGA
((((((((..((((....((((((....))))))....))))..))..))))..((((((......))))))..........)).......... ( -31.50)
>consensus
____GUGAUGGUGGUGCUGCUGCAAAUAUGCGGCCAAGUCGCUGCCUGGAACAAGCCUUAAGCAUCUGGGGCAUGCUACAAACGAGUGGAAAGA
.........((..(((((((((((....))))))..)).)))..))........((((((......))))))...((((......))))..... (-26.89 = -27.12 +   0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:36 2006