Locus 2528

Sequence ID 3R_DroMel_CAF1
Location 6,879,432 – 6,879,526
Length 94
Max. P 0.552091
window4134

overview

Window 4

Location 6,879,432 – 6,879,526
Length 94
Sequences 6
Columns 95
Reading direction reverse
Mean pairwise identity 80.55
Mean single sequence MFE -25.90
Consensus MFE -13.22
Energy contribution -13.69
Covariance contribution 0.47
Combinations/Pair 1.12
Mean z-score -2.16
Structure conservation index 0.51
SVM decision value 0.04
SVM RNA-class probability 0.552091
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6879432 94 - 27905053
CUGCCCAUAUGAAAAGUGUCGCCAAAACGCGCAUUAGACACUUUU-CCCAGCAUCGCCAAUGCCUUUGCGAUAAAUGGCAUCCAGAUGGCAGUUA
(((((.....(((((((((((((.....).))....)))))))))-)(((..(((((.((.....)))))))...))).........)))))... ( -27.30)
>DroVir_CAF1 37364 80 - 1
--GCAUAUUCCAAAAUUGUCGCCCCAUGCCCCAUUAGAUACUCU-----------GGCAAUGC--UGGCGAUAAAUGAUUGCCAGCUGGCAGUUC
--...........(((((((......((((.....((.....))-----------))))..((--(((((((.....))))))))).))))))). ( -23.80)
>DroSim_CAF1 34060 94 - 1
CUGCCCAUAUGAAAAGUGUCGCCAAAACGCGCAUUAGACACUUUU-CCCGGCAUCGCCAAUGCCACUGCGAUAAAUGGCAUCCAGAUGGCAGUUA
(((((.....(((((((((((((.....).))....)))))))))-)..(((((.....))))).(((.(((.......))))))..)))))... ( -29.10)
>DroEre_CAF1 34719 94 - 1
CUGCCCAUAUGAAAAGUGUCGCCAAAACGCGCAUUAGACACUUUU-CCCGGCAUCGCCAAUGCCACUGCGAUAAAUGGCAUCCAGAUGGCAGUUC
(((((.....(((((((((((((.....).))....)))))))))-)..(((((.....))))).(((.(((.......))))))..)))))... ( -29.10)
>DroYak_CAF1 34646 95 - 1
CUGCCCAUAUGAAAAGUGUCGCCAAAACGCGCAUUAGACACUUUUACCCGGCAUCGCCAAUGCCACUGCGAUAAAUGGCAUCCAGAUGGCAGUUA
.((((......((((((((((((.....).))....)))))))))....))))..((((((((((.(......).)))))).....))))..... ( -26.90)
>DroAna_CAF1 32420 83 - 1
UUGUCCGUAUAAAAAGUGUCGCCAAAACGCGCAUUAGACACUUUU-CCU-----------UGGCUCUGCGAUAAAUGGCAUCCAGAUGGCAGUUA
..(.(((....((((((((((((.....).))....)))))))))-...-----------)))).((((.((...(((...))).)).))))... ( -19.20)
>consensus
CUGCCCAUAUGAAAAGUGUCGCCAAAACGCGCAUUAGACACUUUU_CCCGGCAUCGCCAAUGCCACUGCGAUAAAUGGCAUCCAGAUGGCAGUUA
...........(((((((((................)))))))))....................((((.((...((.....)).)).))))... (-13.22 = -13.69 +   0.47)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:35 2006