Locus 2527

Sequence ID	3R_DroMel_CAF1
Location	6,878,086 – 6,878,197
Length	111
Max. P	0.704736

overview

Window 3

Location	6,878,086 – 6,878,197
Length	111
Sequences	6
Columns	120
Reading direction	reverse
Mean pairwise identity	82.40
Mean single sequence MFE	-35.47
Consensus MFE	-19.84
Energy contribution	-20.81
Covariance contribution	0.98
Combinations/Pair	1.20
Mean z-score	-2.71
Structure conservation index	0.56
SVM decision value	0.36
SVM RNA-class probability	0.704736
Prediction	RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6878086 111 - 27905053
------GUUGCU--UUCUUUUGCAAAAUUGCUUGUUUACUUCAAAGCAAGCAAUUCCUGGAGCAUCAGCUGCGUCAUGGCGCAAAACAAUGC-UGUCAACUUGGGCGUCGCUGCCAUCGC
------.((((.--.......))))((((((((((((......))))))))))))....((....((((.(((((.(((((((......)))-.)))).....))))).))))...)).. ( -34.50)
>DroVir_CAF1 35850 106 - 1
-U----GUUGCU----GCUUUACAAAAUUGCUUGUUUACUUCAAAGCGUGCAUUUCUUGUAGCAUCAGCUGCGUCAGGGCGCAAAACAAUGC-UGUCA-CUUGGGCGUCGCUGACA---C
-.----((.(((----(..((((((((.(((.(((((......))))).))).)).))))))...)))).))((((((((((....(((((.-...))-.))).))))).))))).---. ( -32.80)
>DroPse_CAF1 39775 113 - 1
GUGUUGGCUGCU--UUCUUUUUCAAAAUUGCUUGUUUACUUCAAAGCAAGCAAUUCCUGUAGCAUCAGCUGCGUCAUGGCGCAAAACAAUGC-UGUCA-CUUGGGCGG-GCGGGCGUC--
.....(.((((.--...........((((((((((((......))))))))))))((.(((((....)))))(((.(((((((......)))-.))))-....)))))-)))).)...-- ( -36.20)
>DroGri_CAF1 34166 106 - 1
-U----GUUGCA----GCUUUGCAAAAUUGCUUGUUUACUUCAAAGCGUGCAAUUCUUGUAGCAUCAGCUGCGUCAGGGCGCAAAACAAUGC-UGUCA-CUUGGGCGACGCUGACA---C
-.----...(((----(((((((((((((((.(((((......))))).)))))).))))))....))))))(((((.((((....(((((.-...))-.))).))).).))))).---. ( -36.30)
>DroWil_CAF1 32014 106 - 1
----GAGUUACUGCUCCUUUUGCAAAAUUGCUUGUUUACUUCAAAGCAAGCAAUUCGUGUAGCAUCAGCUGCAUCAUGACGCAAAACAAUGCCUGUCA-CUUAGGCAAC---------AA
----((((....)))).((((((..((((((((((((......)))))))))))).(((((((....)))))))......))))))...((((((...-..))))))..---------.. ( -37.50)
>DroMoj_CAF1 36135 106 - 1
-U----GUUGCU----GCUUUACAAAAUUGCUUGUUUACUUCAAAGCGUGCAUUUCUUGUAGCAUCAGCUGCGUCAGGGCGCAAAACAAUGC-UGUCA-CUUGGGCGCCGCUGACA---C
-.----((.(((----(..((((((((.(((.(((((......))))).))).)).))))))...)))).))((((((((((....(((((.-...))-.))).))))).))))).---. ( -35.50)
>consensus
_U____GUUGCU____CCUUUGCAAAAUUGCUUGUUUACUUCAAAGCAAGCAAUUCUUGUAGCAUCAGCUGCGUCAGGGCGCAAAACAAUGC_UGUCA_CUUGGGCGACGCUGACA___C
......(((((..............((((((.(((((......))))).))))))...))))).((((((((((....)))))..........((((......))))..)))))...... (-19.84 = -20.81 +   0.98)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:34 2006