Locus 2526

Sequence ID 3R_DroMel_CAF1
Location 6,875,697 – 6,875,793
Length 96
Max. P 0.862598
window4132

overview

Window 2

Location 6,875,697 – 6,875,793
Length 96
Sequences 5
Columns 96
Reading direction reverse
Mean pairwise identity 99.58
Mean single sequence MFE -14.24
Consensus MFE -14.38
Energy contribution -14.58
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.44
Structure conservation index 1.01
SVM decision value 0.83
SVM RNA-class probability 0.862598
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6875697 96 - 27905053
GUUUCGAGUGCUUAAUCAUAACAUACAUUCAUAAUUCAUUUGUAGAGUAUAUGCCUGGCUUUAAACUAAAUCAUUAAUAUAUUUUACAAUUAUCUU
.....(((((...............))))).........(((((((((((((...((..((......))..))...)))))))))))))....... ( -15.06)
>DroSec_CAF1 29933 96 - 1
GUUUCGAGUGCUUAAUCAUAACAUACAUUCAUAAUUCAUUUGUAGAGUACAUGCCUGGCUUUAAACUAAAUCAUUAAUAUAUUUUACAAUUAUCUU
.....(((((...............))))).........((((((((((.((...((..((......))..))...)).))))))))))....... ( -10.96)
>DroSim_CAF1 30256 96 - 1
GUUUCGAGUGCUUAAUCAUAACAUACAUUCAUAAUUCAUUUGUAGAGUAUAUGCCUGGCUUUAAACUAAAUCAUUAAUAUAUUUUACAAUUAUCUU
.....(((((...............))))).........(((((((((((((...((..((......))..))...)))))))))))))....... ( -15.06)
>DroEre_CAF1 30996 96 - 1
GUUUCGAGUGCUUAAUCAUAACAUACAUUCAUAAUUCAUUUGUAGAGUAUAUGCCUGGCUUUAAACUAAAUCAUUAAUAUAUUUUACAAUUAUCUU
.....(((((...............))))).........(((((((((((((...((..((......))..))...)))))))))))))....... ( -15.06)
>DroYak_CAF1 30782 96 - 1
GUUUCGAGUGCUUAAUCAUAACAUACAUUCAUAAUUCAUUUGUAGAGUAUAUGCCUGGCUUUAAACUAAAUCAUUAAUAUAUUUUACAAUUAUCUU
.....(((((...............))))).........(((((((((((((...((..((......))..))...)))))))))))))....... ( -15.06)
>consensus
GUUUCGAGUGCUUAAUCAUAACAUACAUUCAUAAUUCAUUUGUAGAGUAUAUGCCUGGCUUUAAACUAAAUCAUUAAUAUAUUUUACAAUUAUCUU
.....(((((...............))))).........(((((((((((((...((..((......))..))...)))))))))))))....... (-14.38 = -14.58 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:33 2006