| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 6,872,804 – 6,872,898 |
| Length | 94 |
| Max. P | 0.645157 |
| Location | 6,872,804 – 6,872,898 |
|---|---|
| Length | 94 |
| Sequences | 3 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 84.13 |
| Mean single sequence MFE | -20.53 |
| Consensus MFE | -12.33 |
| Energy contribution | -14.00 |
| Covariance contribution | 1.67 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.58 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.645157 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6872804 94 - 27905053 GAUUUUAACAUUCUG-----------AAAAACAUAUUUUUAAGUAAUACCAUCACUUUUCCUGCUGGGAUUUUAGCAAAUAAGCACAAGUAGAUUCUCAGAAAUA ..........(((((-----------(......((((....)))).....(((((((((((....)))).....((......))..)))).)))..))))))... ( -11.30) >DroSec_CAF1 27053 99 - 1 CAUUUCAACAUUCUGAAGAAUAAUUGAAAAACAUAUUUUUAAGUAAUA------CGCUUCCUGAUGGGAGUGUAGCAAAUAAGCACAAGUAUAUUCUCAGAAAUA ..........((((((.(((((.(((((((.....)))))))((..((------(((((((....)))))))))((......)))).....)))))))))))... ( -25.70) >DroSim_CAF1 27341 105 - 1 CAUUUCAACAUUCUGAAGAAUAAUUGAAAAACAUAUUUUUAAGUAAUACCAUCACGCUUCCUGAUGGGAGUGUAGCAAAUAAGCACAAGUAUAUUCUCAGAAAUA ..........((((((.(((((.(((((((.....)))))))....(((....((((((((....)))))))).((......))....))))))))))))))... ( -24.60) >consensus CAUUUCAACAUUCUGAAGAAUAAUUGAAAAACAUAUUUUUAAGUAAUACCAUCACGCUUCCUGAUGGGAGUGUAGCAAAUAAGCACAAGUAUAUUCUCAGAAAUA ..........((((((.....................................((((((((....)))))))).((......))............))))))... (-12.33 = -14.00 + 1.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:32 2006