Locus 252

Sequence ID 3R_DroMel_CAF1
Location 982,496 – 982,593
Length 97
Max. P 0.800381
window441

overview

Window 1

Location 982,496 – 982,593
Length 97
Sequences 3
Columns 97
Reading direction forward
Mean pairwise identity 91.64
Mean single sequence MFE -24.03
Consensus MFE -20.42
Energy contribution -21.53
Covariance contribution 1.11
Combinations/Pair 1.04
Mean z-score -2.33
Structure conservation index 0.85
SVM decision value 0.61
SVM RNA-class probability 0.800381
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 982496 97 + 27905053
AUUCGAAUAUUUACCGAGACAAUAAAUUCGGUUUUGAACAAGUGGGGCAACCCCCUAUACUAUACUCUAUGUACAUACAUACUAGUCUCGUAAUGGC
..............((((((....................((.(((....))).))...........(((((....)))))...))))))....... ( -19.40)
>DroSec_CAF1 28106 93 + 1
AUUCGAAUAUUUACAGAGACAAUAAAUUCGGUUUUGGACAAGUGGGGCAACCCACUAUGCUACACUCUAUGUACA----CACUUGUCUCGUAAUGGC
..........((((.(((((((..................((((((....)))))).((.((((.....))))))----...))))))))))).... ( -24.70)
>DroSim_CAF1 29396 93 + 1
AUUCGAAUAUUUACCGAGACAAUAAAUUCGGUUUUGGACAAGUGGGGCAACCCACUAUGCCAUACUCUAUGUACA----CACUUGUCUCGUAAUGGC
..............((((((((............(((.((((((((....)))))).)))))(((.....)))..----...))))))))....... ( -28.00)
>consensus
AUUCGAAUAUUUACCGAGACAAUAAAUUCGGUUUUGGACAAGUGGGGCAACCCACUAUGCUAUACUCUAUGUACA____CACUUGUCUCGUAAUGGC
..........((((.(((((((............(((...((((((....))))))...)))(((.....))).........))))))))))).... (-20.42 = -21.53 +   1.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:42 2006