| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 6,862,297 – 6,862,402 |
| Length | 105 |
| Max. P | 0.657761 |
| Location | 6,862,297 – 6,862,402 |
|---|---|
| Length | 105 |
| Sequences | 4 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 85.36 |
| Mean single sequence MFE | -25.18 |
| Consensus MFE | -21.05 |
| Energy contribution | -21.18 |
| Covariance contribution | 0.13 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.55 |
| Structure conservation index | 0.84 |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.657761 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6862297 105 - 27905053 CUGGGUGCCAUGCAACUUGAACAACUGUGUUGAGUGCCUCUUCUCAGCACAUCCCC-CCCCCAC---ACUAUCACCCCUGGAAAAUCCCUCUUCCUGUCCCGGCCCAUG ...((.(((..(((...........(((((((((........))))))))).....-.......---............((((........)))))))...)))))... ( -23.50) >DroSec_CAF1 16627 109 - 1 CUGGGUGCCAUGCAACUUGAACAACUGUGUUGAGUGCCUCUUCUCAGCACAUCCCUCCCCCCACCCUACUUUCGCCCCUGGAACAUCCCUCUUCCUGUCCCGGCCCAUG ..(((((.((.......))......(((((((((........)))))))))..........))))).......(((...((((........))))......)))..... ( -24.90) >DroEre_CAF1 17294 98 - 1 CUGGGUGCCAUGCAACUUAAACAACUGUGUUGAGAGCCUCUUCUCAGCACAUCCCCGCGUA-----------CCCCCCUGGAAAAUCCCCCUUCCUGUCCUGGUCCAUG ..((((((...)))...........(((((((((((....)))))))))))..)))..(.(-----------((.....((((........))))......))).)... ( -24.30) >DroYak_CAF1 16834 102 - 1 CUGGGUGCCAUGCAACUUGAACAACUGUGUUGAGUGCCUCUUCUCAGCACAUCCCAGCAUCCACC-------CCCCCCUGGAAUAUCCGCCUUCCUGUCCUGGGCCAUG .(((((((((.......))......(((((((((........))))))))).....)))))))((-------(......((((........))))......)))..... ( -28.00) >consensus CUGGGUGCCAUGCAACUUGAACAACUGUGUUGAGUGCCUCUUCUCAGCACAUCCCCGCCCCCAC________CCCCCCUGGAAAAUCCCCCUUCCUGUCCCGGCCCAUG ...((.(((..(((...........(((((((((........)))))))))............................((((........)))))))...)))))... (-21.05 = -21.18 + 0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:23 2006