Locus 2516

Sequence ID 3R_DroMel_CAF1
Location 6,858,686 – 6,858,787
Length 101
Max. P 0.755246
window4119

overview

Window 9

Location 6,858,686 – 6,858,787
Length 101
Sequences 5
Columns 103
Reading direction forward
Mean pairwise identity 84.38
Mean single sequence MFE -33.95
Consensus MFE -22.74
Energy contribution -24.38
Covariance contribution 1.64
Combinations/Pair 1.24
Mean z-score -2.07
Structure conservation index 0.67
SVM decision value 0.49
SVM RNA-class probability 0.755246
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6858686 101 + 27905053
AAACGAGCAUUAUUGAGUGUUCGAGUAUGGCCAGAGACGAGGAUGGAUGGCAAACAGCGGGGCAUCGGGAUACCGAUGAACGGCGA-ACUGAAC-UCUCCGCA
...((((((((....)))))))).((...((((..............))))..)).((((((((((((....))))))..(((...-.)))...-.)))))). ( -34.34)
>DroSec_CAF1 13056 101 + 1
AAACGAGCAUUAUUGAGUGUUCGAGUAUGGCCAGAGACGAGGAUGGAUGGCAAACAGCGGGGCAUCGGGAUACCGAUGAACGGCGA-ACUGAAC-UCCCCGCA
...((((((((....)))))))).((...((((..............))))..)).((((((((((((....))))))..(((...-.)))...-.)))))). ( -37.34)
>DroEre_CAF1 13639 101 + 1
AAACGAGCAUUAUUGAGUGUUCGAGUAUGGCCAGAGACGAGGAUGGAUGGCAAACAGCGGGGCAUCGGUAUACCAACGAACGGCGA-ACUGAAC-UCCCAGCA
...((((((((....)))))))).((...((((..............))))..)).((((((..(((((...((.......))...-)))))..-)))).)). ( -27.04)
>DroYak_CAF1 13295 101 + 1
AAACGAGCAUUAUUGAGUGUUCGAGUAUGGCCAGAGACGAGGAUGGAUGGCAAACAGCGGGGCAUUGGGAUACCGAUGAACGGCGA-GCUCAAC-UCCCCGCA
...((((((((....)))))))).((...((((..............))))..)).((((((..(((((...(((.....)))...-.))))).-.)))))). ( -35.94)
>DroAna_CAF1 12270 103 + 1
AAAUGAGCAUUAUUGAGUGUUCGAGUACGGCCCGAGAUGGGGCUGAAUGGGAAGCUGGCGAGCAGCUGACAAAAAAUGGGCUCUGAAGCUGAUUUUUCUCGCA
....(((((((....)))))))(((..((((((......))))))....(..(((((.....)))))..).((((((.((((....)))).)))))))))... ( -35.10)
>consensus
AAACGAGCAUUAUUGAGUGUUCGAGUAUGGCCAGAGACGAGGAUGGAUGGCAAACAGCGGGGCAUCGGGAUACCGAUGAACGGCGA_ACUGAAC_UCCCCGCA
...((((((((....)))))))).((...((((..............))))..)).((((((((((((....))))))..(((.....))).....)))))). (-22.74 = -24.38 +   1.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:21 2006