Locus 2514

Sequence ID 3R_DroMel_CAF1
Location 6,857,632 – 6,857,732
Length 100
Max. P 0.796881
window4117

overview

Window 7

Location 6,857,632 – 6,857,732
Length 100
Sequences 5
Columns 100
Reading direction forward
Mean pairwise identity 99.20
Mean single sequence MFE -24.59
Consensus MFE -23.57
Energy contribution -23.77
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.41
Structure conservation index 0.96
SVM decision value 0.60
SVM RNA-class probability 0.796881
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6857632 100 + 27905053
GCCUGUUGGGGAAAAGGCUACAAAACCAAAAGGCGAACAUCGGGCUUCGAGCAUUAUUUCAAAAUGAGAGCGAAAGUGCGAGAAAGUGCGGCAAGAAGGU
((((.((((................)))).)))).....(((.(((((..((....((((.....))))((....))))..).)))).)))......... ( -24.69)
>DroSec_CAF1 12039 100 + 1
GCCUGUUGGGGAAAAGGCUACAAAACCAAAAGGCGAACAUCGGGCUUCGAGCAUUAUUUCAAAAUGAGAGCGAAAGUGCGAGAAAGUGCGGCAAGAAGGU
((((.((((................)))).)))).....(((.(((((..((....((((.....))))((....))))..).)))).)))......... ( -24.69)
>DroSim_CAF1 13956 100 + 1
GCCUGUUGGGGAAAAGGCUACAAAACCAAAAGGCGAACAUCGGGCUUCGAGCAUUAUUUCAAAAUGAGAGCGAAAGUGCGAGAAAGUGCGGCAAGAAGGU
((((.((((................)))).)))).....(((.(((((..((....((((.....))))((....))))..).)))).)))......... ( -24.69)
>DroEre_CAF1 12574 100 + 1
GCCUGUUGGGGAAAAGGCUACAAAACCAAAAGGCGAACAUCGGGGUUCGAGCAUUAUUUCAAAAUGAGAGCGAAAGUGCGAGAAAGUGCGGCAAGAAGGU
((((.((((................)))).))))((((......))))..(((((.((((.....))))((....)).......)))))........... ( -22.99)
>DroYak_CAF1 12246 100 + 1
GCCUGUUGGGGAAAAGGCUACAAAACCAAAAGGCGAACAUCGGGCUUCGAGCAUUAUUUCAAAAUGAGAGCGAAAGUGCGAGAAAGUGCGGCCAGAAGGU
((((.((((................)))).))))......((.(((((..((....((((.....))))((....))))..).)))).))(((....))) ( -25.89)
>consensus
GCCUGUUGGGGAAAAGGCUACAAAACCAAAAGGCGAACAUCGGGCUUCGAGCAUUAUUUCAAAAUGAGAGCGAAAGUGCGAGAAAGUGCGGCAAGAAGGU
((((.((((................)))).)))).....(((.(((((..((....((((.....))))((....))))..).)))).)))......... (-23.57 = -23.77 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:19 2006